Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_E16
(776 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 29 0.74
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 28 1.3
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 27 2.3
SPBC902.05c |idh2|glu2|isocitrate dehydrogenase |Schizosaccharom... 27 3.0
SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr... 27 3.0
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha... 26 6.9
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 26 6.9
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 26 6.9
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 25 9.2
SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr 1... 25 9.2
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 29.1 bits (62), Expect = 0.74
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 404 PQTQRLQTIRENGIIDNPNGPPLYGVKWKKLVF 502
P + RLQ +R G+ PNG P Y ++K +VF
Sbjct: 556 PNSSRLQKLRAPGLC--PNGSPNYRNRYKLIVF 586
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 28.3 bits (60), Expect = 1.3
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +2
Query: 329 YHLEQFLRALPMEHTV*NTEGTEVPPQTQRLQTI 430
Y LEQ L+ P+EH + TE + PP+ R++T+
Sbjct: 86 YGLEQQLKTNPLEHPILITEPFDNPPE-NRVKTL 118
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 27.5 bits (58), Expect = 2.3
Identities = 13/50 (26%), Positives = 21/50 (42%)
Frame = +1
Query: 433 REWDYRQSERPSSVWSQMEEAGIWEPRRRDESSTPCEAGLVFIIRSITLE 582
R W + +SE PS + S + W D T C+ +F + I +
Sbjct: 322 RSWFFNRSEIPSDITSGSPQPAKWSEPVADFPDTKCDIDKMFSKQKILFD 371
>SPBC902.05c |idh2|glu2|isocitrate dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -3
Query: 687 KVPXSWKTVHVHPIPKKGDRSDP 619
KVP W+ V V+PI K G + P
Sbjct: 72 KVPIEWERVKVYPILKNGTTTIP 94
>SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 322 MLVSSRTIPQSTPHGTYGIKYRGNRSPSANPEAPND 429
+L S I P+ GIK +G SP E PN+
Sbjct: 338 ILPQSMPIASVPPYSLQGIKRQGTHSPMVEGENPNN 373
>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
Wis1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 605
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +1
Query: 202 IAGWYVAKKISGNA-LWMTAVAPGSMDELYSGGGRCDG 312
I +Y A + G+ + M + GSMD+LY+GG + +G
Sbjct: 378 IVDFYGAFFVEGSVFICMEYMDAGSMDKLYAGGIKDEG 415
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 25.8 bits (54), Expect = 6.9
Identities = 15/56 (26%), Positives = 23/56 (41%)
Frame = -3
Query: 171 SAMTCPSSNEACGEY*AVGSGLALXPGIAEVHGRR*PLTIMWAVCPSAYKGNKKKK 4
+A T NE C + S P + +H VC +Y+GN+KK+
Sbjct: 11 AASTSNKGNELCSSSTDITSLSVSSPNESVIHSSHSASEADEYVCKLSYEGNRKKR 66
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 25.8 bits (54), Expect = 6.9
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +1
Query: 442 DYRQSERPSSVWSQMEEAGIWEPRRRDESSTPCEAGLV 555
+Y S+ S +W I+E RR S+ E+G+V
Sbjct: 967 EYLFSQESSQLWDDSPYRSIFEDRRCSTSAVILESGIV 1004
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 231 LWKRTVDDRSGSR*YG*TLLRWRAVRW 311
+WK V+DRSG + G T W+ W
Sbjct: 558 VWKLLVNDRSGGKHEG-TFENWQLALW 583
>SPAC521.02 |||WLM domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 283
Score = 25.4 bits (53), Expect = 9.2
Identities = 24/74 (32%), Positives = 33/74 (44%)
Frame = +3
Query: 327 GIISNNSSEHSPWNIRYKIQREPKSLRKPRGSKRSERMGLSTIRTALLCMESNGRSWYLG 506
GI S+ H +QR+ K RKP S +R T + L + N R L
Sbjct: 178 GITLERSTMHGVETCGGSLQRKKKIRRKPTPSSTKKRKLTRTGQK--LGTDMNIRLELLK 235
Query: 507 APAQR*EQYSMRGR 548
+PA+ + SMRGR
Sbjct: 236 SPAKP-QAQSMRGR 248
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,543,726
Number of Sequences: 5004
Number of extensions: 80402
Number of successful extensions: 220
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 220
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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