Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_E16
(776 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 33 0.30
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 33 0.30
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 33 0.30
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 31 0.70
U41012-7|AAM75375.1| 639|Caenorhabditis elegans Hypothetical pr... 31 1.2
U41012-6|AAM75376.1| 642|Caenorhabditis elegans Hypothetical pr... 31 1.2
AF016418-7|AAK18898.1| 248|Caenorhabditis elegans Hypothetical ... 29 2.8
U28940-6|AAA68352.1| 925|Caenorhabditis elegans Hypothetical pr... 29 4.9
U80454-4|AAB37876.3| 896|Caenorhabditis elegans Prion-like-(q/n... 28 6.5
U64835-5|AAG24196.1| 592|Caenorhabditis elegans Hypothetical pr... 28 6.5
U41545-7|AAK39136.1| 687|Caenorhabditis elegans Hypothetical pr... 28 6.5
AF068719-7|AAO21425.1| 399|Caenorhabditis elegans Uncoordinated... 28 6.5
AF068719-6|AAV58864.1| 457|Caenorhabditis elegans Uncoordinated... 28 6.5
AF068719-5|AAC17781.1| 458|Caenorhabditis elegans Uncoordinated... 28 6.5
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 28 6.5
Z50176-2|CAA90539.1| 1115|Caenorhabditis elegans Hypothetical pr... 28 8.6
U53340-3|AAA96208.1| 578|Caenorhabditis elegans Hypothetical pr... 28 8.6
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 32.7 bits (71), Expect = 0.30
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -3
Query: 684 VPXSWKTVHVHPIPKKGDRSDPSXYRPIAI 595
VP WKT I KKGDR + YRPI +
Sbjct: 428 VPKPWKTSKTTLIFKKGDRENLENYRPICL 457
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 32.7 bits (71), Expect = 0.30
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -3
Query: 684 VPXSWKTVHVHPIPKKGDRSDPSXYRPIAI 595
VP WKT I KKGDR + YRPI +
Sbjct: 599 VPKPWKTSKTTLIFKKGDRENLENYRPICL 628
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 32.7 bits (71), Expect = 0.30
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = -3
Query: 684 VPXSWKTVHVHPIPKKGDRSDPSXYRPIAI 595
VP WKT I KKGDR + YRPI +
Sbjct: 338 VPKPWKTSKTTLIFKKGDRENLENYRPICL 367
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 31.5 bits (68), Expect = 0.70
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -3
Query: 690 NKVPXSWKTVHVHPIPK-KGDRSDPSXYRPIAITS 589
N +P WK +V IPK K D + S YRPI++ S
Sbjct: 378 NIIPDKWKKANVIMIPKPKKDPAIASSYRPISLLS 412
>U41012-7|AAM75375.1| 639|Caenorhabditis elegans Hypothetical
protein C06A6.2a protein.
Length = 639
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +2
Query: 350 RALPMEHTV*NTEGTEVPPQTQRLQTIRENGI--IDNPNGPPLYGVK 484
R+ +H T + P ++ Q + +N I +DN NGPPL VK
Sbjct: 392 RSKKEDHAASTTSVLQAPNYSELKQMLEKNNILKVDNENGPPLKRVK 438
>U41012-6|AAM75376.1| 642|Caenorhabditis elegans Hypothetical
protein C06A6.2b protein.
Length = 642
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +2
Query: 350 RALPMEHTV*NTEGTEVPPQTQRLQTIRENGI--IDNPNGPPLYGVK 484
R+ +H T + P ++ Q + +N I +DN NGPPL VK
Sbjct: 392 RSKKEDHAASTTSVLQAPNYSELKQMLEKNNILKVDNENGPPLKRVK 438
>AF016418-7|AAK18898.1| 248|Caenorhabditis elegans Hypothetical
protein C49G7.3 protein.
Length = 248
Score = 29.5 bits (63), Expect = 2.8
Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 5/99 (5%)
Frame = -3
Query: 414 WVCGGTSVPSVFYTVCSMGSA-LRNCSR*YQHLVFTIAPPATGVEFIHTTWSHCGHPQCV 238
+ C T+ P+ V M SA L+NC+R T V+F T S + QC
Sbjct: 76 FACYTTATPTPAPVVPDMRSAALKNCARTCGLCCKTSDFDCPNVQFPRLTCSTITNEQCR 135
Query: 237 S---RDLFC-HVPSGYGMSSPPRCFPSAMTCPSSNEACG 133
S R + PS G + C M C + CG
Sbjct: 136 SSVWRTIIATDCPSACGFCNQGGCVDGVMDCANDLSICG 174
>U28940-6|AAA68352.1| 925|Caenorhabditis elegans Hypothetical
protein T24H7.2 protein.
Length = 925
Score = 28.7 bits (61), Expect = 4.9
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = -2
Query: 253 SSTVRFQRSFLPRTIRL--WNELPSAVFPERYDMSFFKRGLWRVLSGRQRLGS 101
++ V+ ++ LP +RL N+ PSA P +YD+ KR + + ++RL S
Sbjct: 640 ATEVKEKKKELPSIVRLRITNKYPSAFVPNKYDVQEEKRRM-EAFAEKERLAS 691
>U80454-4|AAB37876.3| 896|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 66
protein.
Length = 896
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = +3
Query: 285 LLRWRAVRW*KRDAGIISNNSSEHSPWNIRYKIQREPKS-LRKPRGSKRSER 437
L+ W +W K+DAG ++ SE+ NI K++ P +RK SKR ++
Sbjct: 530 LIMWGIQKWLKKDAGRVT-QFSEYIWKNIIEKMEGHPWGVVRKHTPSKRKDQ 580
>U64835-5|AAG24196.1| 592|Caenorhabditis elegans Hypothetical
protein T09D3.3 protein.
Length = 592
Score = 28.3 bits (60), Expect = 6.5
Identities = 18/63 (28%), Positives = 24/63 (38%)
Frame = -3
Query: 324 HLVFTIAPPATGVEFIHTTWSHCGHPQCVSRDLFCHVPSGYGMSSPPRCFPSAMTCPSSN 145
H + + PA + HC QCV+R + H Y P C P M PS +
Sbjct: 264 HPLVLVVHPAPQAQCSPACQPHCSQ-QCVARLQYMHESQFYNHILEPSCRPDCM--PSCH 320
Query: 144 EAC 136
C
Sbjct: 321 VDC 323
>U41545-7|AAK39136.1| 687|Caenorhabditis elegans Hypothetical
protein C02F12.8 protein.
Length = 687
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = -3
Query: 252 HPQCVSRDLFCHVPSGYGMSSPPRCFPSAMT 160
HPQ V++ + HVP G +PP+ P+ T
Sbjct: 162 HPQIVNQPMHPHVPVGSQNYNPPQFVPAPPT 192
>AF068719-7|AAO21425.1| 399|Caenorhabditis elegans Uncoordinated
protein 23, isoform b protein.
Length = 399
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/83 (22%), Positives = 34/83 (40%)
Frame = +1
Query: 346 PQSTPHGTYGIKYRGNRSPSANPEAPNDPREWDYRQSERPSSVWSQMEEAGIWEPRRRDE 525
P ST T ++ ++ + + P++ RQ+ PS+ S + EP+ +
Sbjct: 81 PTSTQSPTSTLRRNSQQNQAPPQYSQQQPQQAQQRQTTPPSTKASSRPPSRTREPKEPEV 140
Query: 526 SSTPCEAGLVFIIRSITLESKGS 594
P L + + LE KGS
Sbjct: 141 PERPAVIPLPYEKKEKPLEKKGS 163
>AF068719-6|AAV58864.1| 457|Caenorhabditis elegans Uncoordinated
protein 23, isoform c protein.
Length = 457
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/83 (22%), Positives = 34/83 (40%)
Frame = +1
Query: 346 PQSTPHGTYGIKYRGNRSPSANPEAPNDPREWDYRQSERPSSVWSQMEEAGIWEPRRRDE 525
P ST T ++ ++ + + P++ RQ+ PS+ S + EP+ +
Sbjct: 139 PTSTQSPTSTLRRNSQQNQAPPQYSQQQPQQAQQRQTTPPSTKASSRPPSRTREPKEPEV 198
Query: 526 SSTPCEAGLVFIIRSITLESKGS 594
P L + + LE KGS
Sbjct: 199 PERPAVIPLPYEKKEKPLEKKGS 221
>AF068719-5|AAC17781.1| 458|Caenorhabditis elegans Uncoordinated
protein 23, isoform a protein.
Length = 458
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/83 (22%), Positives = 34/83 (40%)
Frame = +1
Query: 346 PQSTPHGTYGIKYRGNRSPSANPEAPNDPREWDYRQSERPSSVWSQMEEAGIWEPRRRDE 525
P ST T ++ ++ + + P++ RQ+ PS+ S + EP+ +
Sbjct: 140 PTSTQSPTSTLRRNSQQNQAPPQYSQQQPQQAQQRQTTPPSTKASSRPPSRTREPKEPEV 199
Query: 526 SSTPCEAGLVFIIRSITLESKGS 594
P L + + LE KGS
Sbjct: 200 PERPAVIPLPYEKKEKPLEKKGS 222
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 28.3 bits (60), Expect = 6.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 690 NKVPXSWKTVHVHPIPKKG 634
+K+P WK + PIPKKG
Sbjct: 820 SKIPDCWKKAIIIPIPKKG 838
>Z50176-2|CAA90539.1| 1115|Caenorhabditis elegans Hypothetical protein
C09G1.2 protein.
Length = 1115
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = +1
Query: 394 RSPSANPEAPNDPREWDYRQSERPSSVWSQMEEAG--IWEPR 513
R+P P+ P++P E + ++ RP ++ E G + EPR
Sbjct: 1054 RAPPEQPQEPDEPEESEEQEPVRPEQQNIEIPEGGGVLTEPR 1095
>U53340-3|AAA96208.1| 578|Caenorhabditis elegans Hypothetical
protein F02E8.5 protein.
Length = 578
Score = 27.9 bits (59), Expect = 8.6
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -3
Query: 267 WSHCGHPQCVSRDLFCH 217
WS C HP CV+ +F H
Sbjct: 12 WSRCVHPSCVAWVIFIH 28
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,998,629
Number of Sequences: 27780
Number of extensions: 480953
Number of successful extensions: 1204
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1204
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -