Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_E12
(826 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 34 0.16
08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,322... 33 0.21
02_01_0302 - 2021221-2023305 30 1.9
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 30 1.9
02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550 29 3.4
02_02_0691 + 12999452-12999820 29 3.4
12_01_0302 - 2286171-2286341,2286747-2286968 29 4.5
12_01_0298 - 2250517-2251235,2251331-2251577,2251615-2252951,225... 29 4.5
09_04_0737 - 19822822-19822973,19823069-19823135,19823666-198238... 29 5.9
02_05_0640 - 30558523-30559027,30559123-30559252,30559388-305598... 29 5.9
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 28 7.8
09_04_0564 + 18565583-18566449,18569662-18570123 28 7.8
01_01_0448 - 3332238-3332330,3332414-3332481,3332570-3332618,333... 28 7.8
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 33.9 bits (74), Expect = 0.16
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 3/76 (3%)
Frame = -3
Query: 710 PPSPAISXTS-TRSSNPXFHTPTTPDL--TSISINPLTPY*KEFAPGLKPPLSSEAPSAY 540
P SP+ S TS + S ++PT+P TS +P +P +P P PS
Sbjct: 1761 PTSPSYSPTSPSYSPTSSAYSPTSPAYSPTSPGYSPTSPSYSPSSPSYNPSSVKYTPSHA 1820
Query: 539 LTPSSLGMAKGVSPPY 492
+PSS SP Y
Sbjct: 1821 YSPSSPNYYSSTSPTY 1836
>08_01_0364 - 3218309-3218414,3218882-3218941,3219898-3219969,
3220080-3223195,3223303-3223561,3223665-3223951,
3224029-3224364,3224463-3224604,3224690-3224910,
3224990-3225151,3225242-3225400,3225488-3225787,
3226306-3226569,3227370-3227453
Length = 1855
Score = 33.5 bits (73), Expect = 0.21
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Frame = -3
Query: 710 PPSPAISXTS-TRSSNPXFHTPTTPDL--TSISINPLTPY*KEFAPGLKPPLSSEAPSAY 540
P SP+ S TS + S ++PT+P TS S +P +P +P P + +PS
Sbjct: 1699 PTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPNYSPTSPSYNPSSAKYSPSHA 1758
Query: 539 LTPSS--LGMAKGVSPPY 492
+PSS L SP Y
Sbjct: 1759 YSPSSPRLSPYSQTSPNY 1776
>02_01_0302 - 2021221-2023305
Length = 694
Score = 30.3 bits (65), Expect = 1.9
Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Frame = -3
Query: 707 PSPAISXTSTRSSNPXFHTPTTPDLTS--ISINPLTPY*KE-----FA--PGLKPPLSSE 555
PSP S T+ S +P TPT P S ++ P P + FA PG P+ S
Sbjct: 519 PSPPSSSTAPPSHSPPQSTPTHPSYPSPPVTYTPPPPTSADRPDVRFAPPPGSYGPIPST 578
Query: 554 APSAYLTPSSLGMAKGVSPPYFQVNDESQASHL 456
PS+ PS + G PP Q H+
Sbjct: 579 PPSSGSPPSP---SSGYQPPSGQPGASPPTQHV 608
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 30.3 bits (65), Expect = 1.9
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = -3
Query: 710 PPSPAISXTSTRSSNPXFHTPT---TPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAY 540
PPSP+I + T +TPT TP S +P TP + P + +PS+
Sbjct: 105 PPSPSIGTSPTTPGGGGGYTPTPSDTPPSPSSDTSPSTPG-GGCSSSPTPCDAPPSPSSD 163
Query: 539 LTPSSLGMAKGVSP 498
+P++ G G SP
Sbjct: 164 TSPTTPGGGGGYSP 177
>02_03_0132 - 15584673-15584789,15584957-15585054,15585151-15585550
Length = 204
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 3/41 (7%)
Frame = -3
Query: 716 IKPPSPAISXTSTR-SSNP--XFHTPTTPDLTSISINPLTP 603
I PPSPA + S+R S +P F TP T T+ S +P +P
Sbjct: 25 ITPPSPASTPRSSRPSESPRSGFSTPATAPRTAASPSPPSP 65
>02_02_0691 + 12999452-12999820
Length = 122
Score = 29.5 bits (63), Expect = 3.4
Identities = 25/77 (32%), Positives = 28/77 (36%)
Frame = +1
Query: 496 GGETPLAMPSDEGVRYADGASDDNGGFNPGANSF*YGVRGLMEMDVKSGVVGVWNXGFDD 675
G E P+ P G R A G+ G P A G RG E +S G
Sbjct: 11 GSEAPVVAPKPRGWRMAVGSIGGGGISPPVARG---GRRGERERGRRSA-----GGGLTG 62
Query: 676 RVDVXEIAGEGGLMHKG 726
VD AGE G H G
Sbjct: 63 AVDAFRPAGEAGRQHAG 79
>12_01_0302 - 2286171-2286341,2286747-2286968
Length = 130
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = +1
Query: 85 RLQRSRKKHGEDLPTGGRSRRKGEKLE*MQREEQ 186
RL+R RK + D+ G + +GEKLE + +E+
Sbjct: 57 RLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90
>12_01_0298 -
2250517-2251235,2251331-2251577,2251615-2252951,
2256029-2256188
Length = 820
Score = 29.1 bits (62), Expect = 4.5
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 728 SPLCIKPPSPAISXTSTRSSNPXFHTPTTPD 636
SP + P +PA S +S SS+P TP + D
Sbjct: 326 SPQSVVPSNPAASSSSVASSSPALATPESRD 356
>09_04_0737 -
19822822-19822973,19823069-19823135,19823666-19823822,
19824003-19824177,19824364-19824481,19824676-19824874,
19824983-19825062,19825141-19825257,19825791-19825961,
19826121-19826597
Length = 570
Score = 28.7 bits (61), Expect = 5.9
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +2
Query: 77 FYVDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVV 223
F+VD G G + ++++LAV+ G R CR VV DVVV
Sbjct: 93 FHVDPTGDGSSFLQLHRLAVE-GTRRLLAACCRSGVRTVVYTGSADVVV 140
>02_05_0640 - 30558523-30559027,30559123-30559252,30559388-30559868,
30560292-30560346,30560537-30560613,30561228-30561315,
30561490-30561593,30562050-30562231,30562347-30563109,
30563195-30563438,30564513-30564658,30565158-30565283,
30565404-30565517,30565595-30565762,30566283-30566528,
30566605-30566767,30566970-30567064,30567274-30567357,
30567769-30568055,30568359-30568572,30568923-30569140,
30569386-30569623,30570312-30571118,30571202-30571301,
30571694-30571737,30571824-30571973
Length = 1942
Score = 28.7 bits (61), Expect = 5.9
Identities = 20/65 (30%), Positives = 30/65 (46%)
Frame = -1
Query: 244 PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDPRHVSSDSFGVYVKS*SL 65
P F T+LY ++KD S+ L S+ Y L+DP S D+ + +
Sbjct: 1349 PEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYA-LLDPTWASQDNTSTAIGNIVA 1407
Query: 64 ILHSF 50
+LHSF
Sbjct: 1408 LLHSF 1412
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 28.3 bits (60), Expect = 7.8
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Frame = -3
Query: 728 SPLCIKPPSPAISXT-----STRSSNPXFHTPTTPDLTSISINPLTPY*KEFAPGLKPPL 564
SP+ + P ++S T ++RSS P P TP S P TP A L PP
Sbjct: 152 SPIRLSPSPRSMSRTRPSSAASRSSPPFALQPPTP-----SWRPSTP---PSAKTLTPPR 203
Query: 563 SSEAPSAYLTP 531
S +P++ LTP
Sbjct: 204 RSPSPASTLTP 214
>09_04_0564 + 18565583-18566449,18569662-18570123
Length = 442
Score = 28.3 bits (60), Expect = 7.8
Identities = 22/64 (34%), Positives = 28/64 (43%)
Frame = -3
Query: 710 PPSPAISXTSTRSSNPXFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTP 531
PPSP+ S SS+ PT ++ + P T AP PPL P LTP
Sbjct: 22 PPSPSPSPAGAYSSSSFPFFPTAGVTSTTAATPPTTT----APP-SPPLREALPLLSLTP 76
Query: 530 SSLG 519
+S G
Sbjct: 77 ASRG 80
>01_01_0448 -
3332238-3332330,3332414-3332481,3332570-3332618,
3332716-3332798,3332900-3333023,3333389-3333486,
3333555-3333634,3333712-3333782,3333872-3333953,
3334158-3334237,3334365-3334416,3334843-3334958
Length = 331
Score = 28.3 bits (60), Expect = 7.8
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = -3
Query: 698 AISXTSTRSSNPXFHTPTTP 639
A S T+TR S P H PTTP
Sbjct: 2 AASSTATRLSPPRLHAPTTP 21
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,804,047
Number of Sequences: 37544
Number of extensions: 479163
Number of successful extensions: 1477
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1375
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1464
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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