Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_E09
(804 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0... 145 7e-36
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ... 142 5e-35
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S... 43 4e-05
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc... 30 0.33
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 28 1.4
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces... 26 5.5
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe... 26 7.2
>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 292
Score = 145 bits (351), Expect = 7e-36
Identities = 68/107 (63%), Positives = 81/107 (75%)
Frame = -3
Query: 643 IQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 464
I +REPRL++V DP D Q I EAS+VNIPVIALC+TDS L VDIAIP N K SI
Sbjct: 114 ITRTYREPRLIVVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDIAIPTNNKGRKSI 173
Query: 463 GLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQAK 323
GL+W+LLAREVLR+RG L R WDV+ DL+FYRDPEE E++E+ K
Sbjct: 174 GLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRDPEEVEREEEAKK 220
Score = 44.0 bits (99), Expect = 3e-05
Identities = 21/42 (50%), Positives = 24/42 (57%)
Frame = -1
Query: 795 AXAXVXIENPXDVFVIXSRPFGQRAVXKFXAHTRCYAYCGTF 670
A IENP DV V+ +R +G RAV KF AHT A G F
Sbjct: 64 ARVIATIENPADVCVVSTRTYGHRAVLKFAAHTGATAIAGRF 105
Score = 28.7 bits (61), Expect = 1.0
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = -2
Query: 695 GVTXIAXRFTPGAFTN 648
G T IA RFTPG FTN
Sbjct: 97 GATAIAGRFTPGNFTN 112
>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
S0B|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 142 bits (344), Expect = 5e-35
Identities = 67/105 (63%), Positives = 80/105 (76%)
Frame = -3
Query: 643 IQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTKSSHSI 464
I +REPRL+IV DP D Q I EAS+VNIPVIALC+TDS L VD+AIP N K SI
Sbjct: 115 ITRTYREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSI 174
Query: 463 GLMWWLLAREVLRLRGVLPRDQRWDVVVDLFFYRDPEESEKDEQQ 329
GL W+LLAREVLRLRG + R W+V+ DL+FYRDPEE E++E+Q
Sbjct: 175 GLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRDPEEIEREEEQ 219
Score = 48.8 bits (111), Expect = 9e-07
Identities = 24/42 (57%), Positives = 25/42 (59%)
Frame = -1
Query: 795 AXAXVXIENPXDVFVIXSRPFGQRAVXKFXAHTRCYAYCGTF 670
A IENP DV VI SRP+G RAV KF AHT A G F
Sbjct: 65 ARVIATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRF 106
Score = 28.7 bits (61), Expect = 1.0
Identities = 12/16 (75%), Positives = 12/16 (75%)
Frame = -2
Query: 695 GVTXIAXRFTPGAFTN 648
G T IA RFTPG FTN
Sbjct: 98 GATAIAGRFTPGNFTN 113
>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
S2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 263
Score = 43.2 bits (97), Expect = 4e-05
Identities = 22/74 (29%), Positives = 39/74 (52%)
Frame = -3
Query: 658 LLLTQIQAAFREPRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIPCNTK 479
L+ T + ++ P L+++L+P ++ EA ++P I + +TD+ R V IP N
Sbjct: 168 LIQTDKKPSYVFPDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPANDD 227
Query: 478 SSHSIGLMWWLLAR 437
S L+ LL+R
Sbjct: 228 SLRCTDLIAGLLSR 241
>SPAC27E2.06c |||methionine-tRNA ligase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 539
Score = 30.3 bits (65), Expect = 0.33
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Frame = -3
Query: 658 LLLTQIQAAFR--EPRLLIVLDPAQDHQPI---TEASYVNIPVIALCNTDSPLRFVDIAI 494
L+LT A F+ +P + ++ D + T A + + LC+ +S RF D+A+
Sbjct: 42 LVLTDAIARFQNLKPDVSVISSTGTDEHGLKVQTVAQTEGVSPLQLCDRNSK-RFADLAV 100
Query: 493 PCNTKSSHSI 464
NTK +H I
Sbjct: 101 AANTKFTHFI 110
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 28.3 bits (60), Expect = 1.4
Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = +3
Query: 372 NKSTTTSQRWSRG---STPRSLSTSRANNHHIKPIE 470
N+S+T +++ SR ST RS STS AN H K E
Sbjct: 106 NRSSTNTEKDSRSIAHSTSRSRSTSPANRHRRKEKE 141
>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -3
Query: 466 IGLMWWLLAREVLRLRGVLPRDQRWD 389
IGL W L REV R + + R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390
>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 564
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Frame = -1
Query: 411 FPVTSAGML--WLICSSTVTLKKVKRM 337
FP S ++ WL +TVTLKK+K +
Sbjct: 480 FPFQSTVLILSWLCVENTVTLKKIKML 506
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,889,637
Number of Sequences: 5004
Number of extensions: 54897
Number of successful extensions: 138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 390427050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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