Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_E07
         (802 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    89   5e-19
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    85   8e-18
SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|ch...    28   1.8  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    27   4.1  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   5.4  
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar...    26   7.2  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 89.4 bits (212), Expect = 5e-19
 Identities = 43/73 (58%), Positives = 52/73 (71%)
 Frame = -2

Query: 573 EASYVNIPVXALCNTDSPTKDLWTLLSPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQR 394
           EAS+VNIPV ALC+TDS    +  +  P N K   SIGL+W+LLAREVLR+RG L R   
Sbjct: 138 EASFVNIPVIALCDTDSILNHV-DIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAP 196

Query: 393 WDVVVDLFFYRXP 355
           WDV+ DL+FYR P
Sbjct: 197 WDVMPDLYFYRDP 209


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 85.4 bits (202), Expect = 8e-18
 Identities = 42/73 (57%), Positives = 51/73 (69%)
 Frame = -2

Query: 573 EASYVNIPVXALCNTDSPTKDLWTLLSPCNTKSSHSIGLMWWLLAREVLRLRGVLPRDQR 394
           EAS+VNIPV ALC+TDS    +   + P N K   SIGL W+LLAREVLRLRG + R   
Sbjct: 139 EASFVNIPVIALCDTDSILNHVDVAI-PINNKGYKSIGLAWYLLAREVLRLRGNISRTTA 197

Query: 393 WDVVVDLFFYRXP 355
           W+V+ DL+FYR P
Sbjct: 198 WEVMPDLYFYRDP 210


>SPCC736.06 |||aspartate-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 611

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -3

Query: 419 VVCFPVTSAGMLWLICSSTVXPEESEKD 336
           V+ FP TS+G   LI S +  PEE  KD
Sbjct: 571 VIAFPKTSSGADLLIGSPSAIPEEMLKD 598


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -2

Query: 603 PCTXTINPF-TEASYVNIPVXALCNTDSPTKDLWTLLSPCNTKSSHSIG 460
           P T T+ P  T ++ + IP  +  +TD+ +  L T  + C T +S   G
Sbjct: 190 PITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPTG 238



 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 603 PCTXTINPF-TEASYVNIPVXALCNTDSPTKDLWTLLSPCNTKSS 472
           P T T+ P  T ++ + IP  +  +TD+ +  L T  + C T +S
Sbjct: 133 PITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCTTSTS 177



 Score = 26.2 bits (55), Expect = 5.4
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = -2

Query: 603 PCTXTINPF-TEASYVNIPVXALCNTDSPTKDLWTLLSPCNTKSS 472
           P T T+ P  T ++ + IP  +  +TD+ +  L T  + C T +S
Sbjct: 246 PITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTS 290


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -2

Query: 465 IGLMWWLLAREVLRLRGVLPRDQRWD 388
           IGL W L  REV R + +  R++ WD
Sbjct: 365 IGLKWTLKLREVERKQLLTAREKWWD 390


>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
           Pop2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 703

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +2

Query: 452 HIKPIEWEDLVLHGDSNVHKSLVGESVLHKAITGMLTYEASVNG 583
           H+       L+LH D  +  S  G   +H AITG+L  EA + G
Sbjct: 348 HVPNFMITSLLLHKDRIITTSGSGTIQIHNAITGVL--EARLEG 389


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,718,880
Number of Sequences: 5004
Number of extensions: 47766
Number of successful extensions: 116
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)