Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_E07
         (802 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...    82   4e-16
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...    82   4e-16
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     29   3.3  
06_03_0543 + 21967787-21970261                                         29   5.7  
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423     28   7.5  
10_06_0171 + 11466934-11466990,11467073-11468312,11468450-114685...    28   9.9  
01_06_1421 + 37232897-37233787                                         28   9.9  

>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score = 82.2 bits (194), Expect = 4e-16
 Identities = 41/88 (46%), Positives = 55/88 (62%)
 Frame = -2

Query: 618 LXVLDPCTXTINPFTEASYVNIPVXALCNTDSPTKDLWTLLSPCNTKSSHSIGLMWWLLA 439
           L + DP T    P  E++  NIP  A C+TDSP + +  +  P N K   SIG ++WLLA
Sbjct: 126 LILTDPRTDH-QPIKESALGNIPTIAFCDTDSPMRYV-DIGIPANNKGKQSIGCLFWLLA 183

Query: 438 REVLRLRGVLPRDQRWDVVVDLFFYRXP 355
           R VL++RG +    +WDV+VDLFFYR P
Sbjct: 184 RMVLQMRGTILPGHKWDVMVDLFFYRDP 211


>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score = 82.2 bits (194), Expect = 4e-16
 Identities = 41/88 (46%), Positives = 56/88 (63%)
 Frame = -2

Query: 618 LXVLDPCTXTINPFTEASYVNIPVXALCNTDSPTKDLWTLLSPCNTKSSHSIGLMWWLLA 439
           L + DP T    P  E++  NIP  A C+TDSP + +  +  P N K  +SIG ++WLLA
Sbjct: 126 LILTDPRTDH-QPIKESALGNIPTIAFCDTDSPMRYV-DIGIPANNKGRNSIGCLFWLLA 183

Query: 438 REVLRLRGVLPRDQRWDVVVDLFFYRXP 355
           R VL++RG +    +WDV+VDLFFYR P
Sbjct: 184 RMVLQMRGTILPGHKWDVMVDLFFYRDP 211


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 207 TRCSSCFWSTPCSRRMVCPGTR*VEHN 127
           T C  C    P   + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301



 Score = 27.9 bits (59), Expect = 9.9
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -2

Query: 207 TRCSSCFWSTPCSRRMVCPGTR 142
           TRC  C    P   R  CPG+R
Sbjct: 81  TRCKECLARAPAGVRQECPGSR 102


>06_03_0543 + 21967787-21970261
          Length = 824

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -2

Query: 459 LMWWLLAREVLRLRGVLPRDQRWDVVVDLF 370
           L W++L RE  +LRGV P +  ++++ + F
Sbjct: 472 LGWFILRREAKQLRGVWPAEAGYEMIANHF 501


>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
          Length = 427

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 207 TRCSSCFWSTPCSRRMVCPGTR*VEHN 127
           T+C  C    P     VCPG+R V  N
Sbjct: 93  TQCKECLAGAPAGITQVCPGSRTVNAN 119


>10_06_0171 +
           11466934-11466990,11467073-11468312,11468450-11468596,
           11469650-11470140
          Length = 644

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 20/70 (28%), Positives = 39/70 (55%)
 Frame = +2

Query: 398 WSRGSTPRSLNTSRANNHHIKPIEWEDLVLHGDSNVHKSLVGESVLHKAITGMLTYEASV 577
           +++ +T R+L    AN H ++ +   +LV     N  ++ VG+  L +A+TG+L + A +
Sbjct: 518 FNKVTTARALGQLVANYHSLRAL---NLV----GNPVQANVGDDALRRAVTGLLPHLAYL 570

Query: 578 NGLMVXVQGS 607
           N   V  +G+
Sbjct: 571 NKQPVKPRGA 580


>01_06_1421 + 37232897-37233787
          Length = 296

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = -3

Query: 605 TLAQXPSTHLLKLHMSTFL*XLCATQTPPLKICGHCYP 492
           TLAQ  +T   +  +  FL      QTP L + GHC P
Sbjct: 35  TLAQTCATGNYRFVIVAFLPVFGKGQTPVLNLAGHCDP 72


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,816,685
Number of Sequences: 37544
Number of extensions: 347062
Number of successful extensions: 903
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)