Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_E03
         (816 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    29   5.3  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    29   5.3  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    29   5.3  

>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
            protein K07E12.1b protein.
          Length = 12268

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = +3

Query: 333  AASGLPDSDDGVPEYPLDXNXPAGTGRDTLSTGCSIH 443
            AA  LP  D G+P YP+    P GT   T STG  I+
Sbjct: 2531 AAQSLPTDDAGMPVYPI--VKPDGTPLATDSTGSFIN 2565


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
            protein K07E12.1a protein.
          Length = 13100

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = +3

Query: 333  AASGLPDSDDGVPEYPLDXNXPAGTGRDTLSTGCSIH 443
            AA  LP  D G+P YP+    P GT   T STG  I+
Sbjct: 2594 AAQSLPTDDAGMPVYPI--VKPDGTPLATDSTGSFIN 2628


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
            protein.
          Length = 13100

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 17/37 (45%), Positives = 20/37 (54%)
 Frame = +3

Query: 333  AASGLPDSDDGVPEYPLDXNXPAGTGRDTLSTGCSIH 443
            AA  LP  D G+P YP+    P GT   T STG  I+
Sbjct: 2594 AAQSLPTDDAGMPVYPI--VKPDGTPLATDSTGSFIN 2628


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,724,589
Number of Sequences: 27780
Number of extensions: 92141
Number of successful extensions: 217
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)