Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_E01
         (800 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...    78   2e-15
SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...    73   6e-14
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    26   7.2  
SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|c...    26   7.2  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    25   9.5  
SPAC27E2.06c |||methionine-tRNA ligase, mitochondrial|Schizosacc...    25   9.5  

>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score = 77.8 bits (183), Expect = 2e-15
 Identities = 35/61 (57%), Positives = 42/61 (68%)
 Frame = -3

Query: 537 LCNTDSPIRFVDNAIPCNTKSSHSIGLMWWLLAXEMLRXXGVLPXDXQWDVVVDLFFYRD 358
           LC+TDS +  VD AIP N K   SIGL+W+LLA E+LR  G L     WDV+ DL+FYRD
Sbjct: 149 LCDTDSILNHVDIAIPTNNKGRKSIGLIWYLLAREVLRVRGTLSRSAPWDVMPDLYFYRD 208

Query: 357 P 355
           P
Sbjct: 209 P 209


>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score = 72.5 bits (170), Expect = 6e-14
 Identities = 33/61 (54%), Positives = 41/61 (67%)
 Frame = -3

Query: 537 LCNTDSPIRFVDNAIPCNTKSSHSIGLMWWLLAXEMLRXXGVLPXDXQWDVVVDLFFYRD 358
           LC+TDS +  VD AIP N K   SIGL W+LLA E+LR  G +     W+V+ DL+FYRD
Sbjct: 150 LCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYRD 209

Query: 357 P 355
           P
Sbjct: 210 P 210


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = +2

Query: 431 ISXANNHHIKPIEWEDLVLHGIALSTNLIGESVLHKCIHXNVD 559
           I  A    ++ IE E  V+HG      L     +H+ +H N++
Sbjct: 4   IDEAITEVVRKIERERSVIHGALSMKRLTQNQTVHQQLHSNIE 46


>SPBC1271.10c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 682 NVPSIXAXLIGCXFGXFHXIYF 747
           NVP I    IGC +G +   YF
Sbjct: 387 NVPCIIGATIGCIYGGYFGDYF 408


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -2

Query: 535  VQHRLPNKICGQCYPMQHQVFPLYWF 458
            V+  LPNK CG C    H      WF
Sbjct: 1567 VERTLPNKRCGTCRHKFHASCLYKWF 1592


>SPAC27E2.06c |||methionine-tRNA ligase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 539

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -3

Query: 543 MHLCNTDSPIRFVDNAIPCNTKSSHSI 463
           + LC+ +S  RF D A+  NTK +H I
Sbjct: 85  LQLCDRNSK-RFADLAVAANTKFTHFI 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,329,266
Number of Sequences: 5004
Number of extensions: 34951
Number of successful extensions: 57
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)