Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_E01
         (800 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609...    79   4e-15
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431...    79   4e-15
04_02_0006 + 8455219-8457469,8457560-8457924                           28   7.5  

>07_03_1272 -
           25360180-25360286,25360454-25360658,25360748-25360945,
           25361034-25361296,25361865-25362009
          Length = 305

 Score = 79.0 bits (186), Expect = 4e-15
 Identities = 33/60 (55%), Positives = 43/60 (71%)
 Frame = -3

Query: 534 CNTDSPIRFVDNAIPCNTKSSHSIGLMWWLLAXEMLRXXGVLPXDXQWDVVVDLFFYRDP 355
           C+TDSP+R+VD  IP N K   SIG ++WLLA  +L+  G +    +WDV+VDLFFYRDP
Sbjct: 152 CDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDP 211


>03_01_0582 -
           4318837-4318967,4319219-4319399,4319504-4319701,
           4319791-4320053,4320453-4320597
          Length = 305

 Score = 79.0 bits (186), Expect = 4e-15
 Identities = 33/60 (55%), Positives = 44/60 (73%)
 Frame = -3

Query: 534 CNTDSPIRFVDNAIPCNTKSSHSIGLMWWLLAXEMLRXXGVLPXDXQWDVVVDLFFYRDP 355
           C+TDSP+R+VD  IP N K  +SIG ++WLLA  +L+  G +    +WDV+VDLFFYRDP
Sbjct: 152 CDTDSPMRYVDIGIPANNKGRNSIGCLFWLLARMVLQMRGTILPGHKWDVMVDLFFYRDP 211


>04_02_0006 + 8455219-8457469,8457560-8457924
          Length = 871

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = -2

Query: 583 QPITETSXVNIXVNAFVQHRLPNKICGQCYPM----QHQVFPLYWFD 455
           QP  +T    + ++ F+    P+++     P     +HQV+P  WF+
Sbjct: 779 QPTDDTFADGVSIHNFIDSMFPDRVAEILDPYMMHEEHQVYPAEWFE 825


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,534,189
Number of Sequences: 37544
Number of extensions: 240091
Number of successful extensions: 344
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2174172540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)