Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_D24
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi...    27   2.6  
SPCC970.04c |mob2||protein kinase activator Mob2|Schizosaccharom...    27   2.6  
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    27   3.4  
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi...    26   6.0  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    26   7.9  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    26   7.9  

>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 798

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = -2

Query: 395 RSRWKLRTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSEL 216
           +S W   T   +  G   +S  +  + S     G  +     SPS+S+PS A+  S S+ 
Sbjct: 21  KSSWSKDTIAVQAVGSSPSSSSSHDFESKEDAEGMNKDESAPSPSTSSPSSASSRSQSKY 80

Query: 215 THRHS 201
             + +
Sbjct: 81  VRKEA 85


>SPCC970.04c |mob2||protein kinase activator
           Mob2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 244

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = -2

Query: 299 NGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSPDLL 174
           N + RH      SSS+ S + K STS+L    SP S  P  L
Sbjct: 14  NRSKRHQNLSDASSSSGSFSKKSSTSQLVRTGSP-SVEPTAL 54


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 19/67 (28%), Positives = 29/67 (43%)
 Frame = -3

Query: 604 SGXRXXGXPLEIPFRVIQSXFLQDSRXERLGFXRNVDLHDDLELDSFSKYXQSASLRHFE 425
           SG R  G P + P   ++S   ++S  +      N DL DD E    +   Q  + R   
Sbjct: 223 SGSRGRGRPRKYPLPNVES---KESSSKVNSKDENFDLQDDSESSEDNLTIQPQTPRRRH 279

Query: 424 KAARHEN 404
           K +RH +
Sbjct: 280 KRSRHNS 286


>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 374

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 28/92 (30%), Positives = 37/92 (40%)
 Frame = -2

Query: 416 TT*EPSHRSRWKLRTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLAT 237
           TT  PS  S     +  S  +   S+S  +    SS S + +       S SSS+ S+  
Sbjct: 151 TTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPI 210

Query: 236 KGSTSELTHRHSPLSFSPDLLSGSRFRSGGRF 141
             STS  +H  S  S S    S SR  S   F
Sbjct: 211 TSSTSS-SHSSSS-SSSSSSSSSSRPSSSSSF 240


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -2

Query: 350 KPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLS 192
           KPS    +R  G S ++  A    K    S S P +     T +++ +HSP+S
Sbjct: 24  KPSPPLPSRRKGKS-ALRSALE--KKNRKSKSKPKVTITSDTPKVSSQHSPVS 73


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +1

Query: 211 WVSSLVEPFVASDGFDEDGDRCLWCLK 291
           W      P VA D  DEDG   +W LK
Sbjct: 898 WEPRWFVPSVAGDDEDEDGSGPIWQLK 924


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,334,349
Number of Sequences: 5004
Number of extensions: 42174
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)