Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_D24
(861 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396 30 2.1
02_02_0537 + 11308195-11309667 30 2.1
01_05_0645 - 23899579-23904483 30 2.1
11_01_0110 + 850780-850805,851465-851537,851558-851720,851947-85... 29 3.6
06_01_0196 + 1520015-1520191,1520483-1520527,1521851-1521910,152... 29 4.8
03_03_0042 + 14009649-14009866,14011342-14011419,14011791-140119... 29 4.8
07_01_0567 - 4214196-4214351,4214539-4214845,4215005-4215069,421... 29 6.3
10_08_0898 + 21424379-21424792,21424974-21425723 28 8.3
04_04_1093 + 30825722-30826168,30826457-30826608,30826926-308270... 28 8.3
01_01_0060 + 477667-477816,479312-479722 28 8.3
>10_05_0012 + 7874326-7874831,7929715-7931393,7931508-7933396
Length = 1357
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/69 (28%), Positives = 29/69 (42%)
Frame = -2
Query: 344 STSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSPDLLSGS 165
ST P + +IN + H PSSS T T + H H P SF P + +
Sbjct: 973 STDPASSMVAFHININNLLQSFPHNKPSSSTKRHDTIPQTPYILHNH-PNSFLPQYILRT 1031
Query: 164 RFRSGGRFC 138
+ ++ R C
Sbjct: 1032 QPKAPCRSC 1040
>02_02_0537 + 11308195-11309667
Length = 490
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/69 (28%), Positives = 29/69 (42%)
Frame = -2
Query: 344 STSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSPDLLSGS 165
ST P + +IN + H PSSS T T + H H P SF P + +
Sbjct: 131 STDPASSMVAFHININNLLQSFPHNKPSSSTKRHDTIPQTPYILHNH-PNSFLPQYILRT 189
Query: 164 RFRSGGRFC 138
+ ++ R C
Sbjct: 190 QPKAPCRSC 198
>01_05_0645 - 23899579-23904483
Length = 1634
Score = 30.3 bits (65), Expect = 2.1
Identities = 20/69 (28%), Positives = 29/69 (42%)
Frame = -2
Query: 344 STSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSPDLLSGS 165
ST P + +IN + H PSSS T T + H H P SF P + +
Sbjct: 1250 STDPASSMVAFHININNLLQSFPHNKPSSSTKRHDTIPQTPYILHNH-PNSFLPQYILRT 1308
Query: 164 RFRSGGRFC 138
+ ++ R C
Sbjct: 1309 QPKAPCRSC 1317
>11_01_0110 +
850780-850805,851465-851537,851558-851720,851947-852260,
852330-852409,852506-852848,853068-853166,853240-853360,
853567-853723,853976-854099,855275-855368,855866-857259,
857882-857924,858240-858458,859379-859605,859701-859948,
860246-860552,860725-861153
Length = 1486
Score = 29.5 bits (63), Expect = 3.6
Identities = 16/46 (34%), Positives = 19/46 (41%)
Frame = -2
Query: 404 PSHRSRWKLRTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRS 267
P H + + RP RPNG P A GS I +HRS
Sbjct: 59 PRHSAAFSRSLRPCRPNGPPPAFASAEFPGSVPDIAQMPPRRRHRS 104
>06_01_0196 +
1520015-1520191,1520483-1520527,1521851-1521910,
1522246-1522358,1522432-1522642,1523087-1523133,
1523211-1523369,1523521-1523624,1524300-1524634
Length = 416
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = +1
Query: 244 SDGFDEDGDRCLWCLKAP 297
SDGFDE D C CL+ P
Sbjct: 282 SDGFDEGADACAVCLERP 299
>03_03_0042 +
14009649-14009866,14011342-14011419,14011791-14011955,
14012071-14012138,14012219-14012258,14013579-14013690,
14013859-14013942
Length = 254
Score = 29.1 bits (62), Expect = 4.8
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -2
Query: 344 STSPKARHYGSS*SINGAFRHHK-HRSPSSSNPSLATKGSTSELTHRHSPLSFSPDLL 174
S SP++R++ S S + A R ++ HR S SL+ G HR + S SPD L
Sbjct: 168 SRSPRSRYHSYSPSPSPARRDYRDHRDDYSPGESLSPHGQDKR-HHRSNGRSASPDEL 224
>07_01_0567 -
4214196-4214351,4214539-4214845,4215005-4215069,
4215406-4215471,4215594-4215639,4215671-4216200
Length = 389
Score = 28.7 bits (61), Expect = 6.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -3
Query: 472 DSFSKYXQSASLRHFEKAARHENPL 398
D+F +Y + SLR+F HE P+
Sbjct: 167 DTFDRYVSAGSLRYFLNCVSHEQPM 191
>10_08_0898 + 21424379-21424792,21424974-21425723
Length = 387
Score = 28.3 bits (60), Expect = 8.3
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = -2
Query: 284 HHKHRSPSSSNPSLATKGSTSELTHRHSPLSFSPD 180
HH H PS AT +TS H+ S LSF+ D
Sbjct: 101 HHHHHIGGMGEPSGATPSATSS-DHQTSMLSFADD 134
>04_04_1093 +
30825722-30826168,30826457-30826608,30826926-30827048,
30827240-30827384,30828032-30828093,30828373-30828586,
30829671-30830585,30830827-30831076,30831164-30831432
Length = 858
Score = 28.3 bits (60), Expect = 8.3
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Frame = -2
Query: 374 TRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSS---NPSLATKGSTSELTHRH 204
T P P+ PS+ P RH S + G R + SPS S PS + S S T
Sbjct: 5 TAPPPPSSPPSSPPPLRH---SPAALGTPRSRRRHSPSPSLALTPSSSASASASASTSSR 61
Query: 203 SPLSFSP 183
+ SP
Sbjct: 62 PKVRPSP 68
>01_01_0060 + 477667-477816,479312-479722
Length = 186
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -2
Query: 287 RHHKHRS-PSSSNPSLATKGSTSELTHRHSPLSFSPDL 177
RHH H S SSS+P +TK + ++L H ++ L
Sbjct: 32 RHHHHYSTSSSSSPPSSTKEAVTQLDHLEQAAAYIKQL 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,107,296
Number of Sequences: 37544
Number of extensions: 347774
Number of successful extensions: 852
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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