Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_D24
(861 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Y09703-1|CAA70874.1| 586|Homo sapiens MEMA protein. 36 0.19
L37368-1|AAA92859.1| 305|Homo sapiens RNA-binding protein protein. 34 0.76
BC108316-1|AAI08317.1| 305|Homo sapiens RNA binding protein S1,... 34 0.76
BC001838-1|AAH01838.1| 305|Homo sapiens RNA binding protein S1,... 34 0.76
BC001659-1|AAH01659.1| 305|Homo sapiens RNA binding protein S1,... 34 0.76
AF274003-1|AAL56665.1| 282|Homo sapiens splicing-related factor... 34 0.76
Y13467-1|CAA73867.1| 1566|Homo sapiens RB18A protein protein. 31 5.4
BC131783-1|AAI31784.1| 1581|Homo sapiens mediator complex subuni... 31 5.4
AF283812-1|AAF98352.1| 1566|Homo sapiens vitamin D receptor-inte... 31 5.4
AF055994-1|AAC39854.1| 1581|Homo sapiens thyroid hormone recepto... 31 5.4
AF015608-1|AAC39791.1| 305|Homo sapiens SR protein protein. 31 5.4
AB051472-1|BAB21776.2| 1505|Homo sapiens KIAA1685 protein protein. 31 5.4
U77718-1|AAB48304.1| 743|Homo sapiens pinin protein. 30 9.4
BC062602-1|AAH62602.1| 717|Homo sapiens pinin, desmosome associ... 30 9.4
AK223612-1|BAD97332.1| 717|Homo sapiens pinin, desmosome associ... 30 9.4
AF195139-1|AAG33941.1| 717|Homo sapiens pinin protein. 30 9.4
>Y09703-1|CAA70874.1| 586|Homo sapiens MEMA protein.
Length = 586
Score = 35.9 bits (79), Expect = 0.19
Identities = 29/84 (34%), Positives = 40/84 (47%)
Frame = -2
Query: 395 RSRWKLRTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSEL 216
RSR + R + S+ + S+S + +S S + S SSS+ S +T GS+S
Sbjct: 428 RSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSS-- 485
Query: 215 THRHSPLSFSPDLLSGSRFRSGGR 144
R S S S S SR RS GR
Sbjct: 486 --RDSSSSTSTSSSSESRSRSRGR 507
>L37368-1|AAA92859.1| 305|Homo sapiens RNA-binding protein protein.
Length = 305
Score = 33.9 bits (74), Expect = 0.76
Identities = 32/92 (34%), Positives = 44/92 (47%)
Frame = -2
Query: 419 GTT*EPSHRSRWKLRTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLA 240
G T E S + R + +TR R S+S ++R SS S +G+ S SSS+ + +
Sbjct: 47 GATKESSEKDRGRDKTRKRRSASSGSSSTRSR--SSSTSSSGSSTSTGSSSGSSSSSASS 104
Query: 239 TKGSTSELTHRHSPLSFSPDLLSGSRFRSGGR 144
GS+S T R S S S S SR R R
Sbjct: 105 RSGSSS--TSRSSSSSSSSGSPSPSRRRHDNR 134
>BC108316-1|AAI08317.1| 305|Homo sapiens RNA binding protein S1,
serine-rich domain protein.
Length = 305
Score = 33.9 bits (74), Expect = 0.76
Identities = 32/92 (34%), Positives = 44/92 (47%)
Frame = -2
Query: 419 GTT*EPSHRSRWKLRTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLA 240
G T E S + R + +TR R S+S ++R SS S +G+ S SSS+ + +
Sbjct: 47 GATKESSEKDRGRDKTRKRRSASSGSSSTRSR--SSSTSSSGSSTSTGSSSGSSSSSASS 104
Query: 239 TKGSTSELTHRHSPLSFSPDLLSGSRFRSGGR 144
GS+S T R S S S S SR R R
Sbjct: 105 RSGSSS--TSRSSSSSSSSGSPSPSRRRHDNR 134
>BC001838-1|AAH01838.1| 305|Homo sapiens RNA binding protein S1,
serine-rich domain protein.
Length = 305
Score = 33.9 bits (74), Expect = 0.76
Identities = 32/92 (34%), Positives = 44/92 (47%)
Frame = -2
Query: 419 GTT*EPSHRSRWKLRTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLA 240
G T E S + R + +TR R S+S ++R SS S +G+ S SSS+ + +
Sbjct: 47 GATKESSEKDRGRDKTRKRRSASSGSSSTRSR--SSSTSSSGSSTSTGSSSGSSSSSASS 104
Query: 239 TKGSTSELTHRHSPLSFSPDLLSGSRFRSGGR 144
GS+S T R S S S S SR R R
Sbjct: 105 RSGSSS--TSRSSSSSSSSGSPSPSRRRHDNR 134
>BC001659-1|AAH01659.1| 305|Homo sapiens RNA binding protein S1,
serine-rich domain protein.
Length = 305
Score = 33.9 bits (74), Expect = 0.76
Identities = 32/92 (34%), Positives = 44/92 (47%)
Frame = -2
Query: 419 GTT*EPSHRSRWKLRTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLA 240
G T E S + R + +TR R S+S ++R SS S +G+ S SSS+ + +
Sbjct: 47 GATKESSEKDRGRDKTRKRRSASSGSSSTRSR--SSSTSSSGSSTSTGSSSGSSSSSASS 104
Query: 239 TKGSTSELTHRHSPLSFSPDLLSGSRFRSGGR 144
GS+S T R S S S S SR R R
Sbjct: 105 RSGSSS--TSRSSSSSSSSGSPSPSRRRHDNR 134
>AF274003-1|AAL56665.1| 282|Homo sapiens splicing-related factor
RNPS1 protein.
Length = 282
Score = 33.9 bits (74), Expect = 0.76
Identities = 32/92 (34%), Positives = 44/92 (47%)
Frame = -2
Query: 419 GTT*EPSHRSRWKLRTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLA 240
G T E S + R + +TR R S+S ++R SS S +G+ S SSS+ + +
Sbjct: 24 GATKESSEKDRGRDKTRKRRSASSGSSSTRSR--SSSTSSSGSSTSTGSSSGSSSSSASS 81
Query: 239 TKGSTSELTHRHSPLSFSPDLLSGSRFRSGGR 144
GS+S T R S S S S SR R R
Sbjct: 82 RSGSSS--TSRSSSSSSSSGSPSPSRRRHDNR 111
>Y13467-1|CAA73867.1| 1566|Homo sapiens RB18A protein protein.
Length = 1566
Score = 31.1 bits (67), Expect = 5.4
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -2
Query: 353 GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 219
GKPS+ + GS S +G+ HH H S SSS+ S + K +S+
Sbjct: 1060 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1103
>BC131783-1|AAI31784.1| 1581|Homo sapiens mediator complex subunit 1
protein.
Length = 1581
Score = 31.1 bits (67), Expect = 5.4
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -2
Query: 353 GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 219
GKPS+ + GS S +G+ HH H S SSS+ S + K +S+
Sbjct: 1075 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1118
>AF283812-1|AAF98352.1| 1566|Homo sapiens vitamin D
receptor-interacting protein complex component DRIP205
protein.
Length = 1566
Score = 31.1 bits (67), Expect = 5.4
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -2
Query: 353 GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 219
GKPS+ + GS S +G+ HH H S SSS+ S + K +S+
Sbjct: 1060 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1103
>AF055994-1|AAC39854.1| 1581|Homo sapiens thyroid hormone
receptor-associated protein complex component TRAP220
protein.
Length = 1581
Score = 31.1 bits (67), Expect = 5.4
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -2
Query: 353 GKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSE 219
GKPS+ + GS S +G+ HH H S SSS+ S + K +S+
Sbjct: 1075 GKPSSHSQYTSSGSV-SSSGSKSHHSHSSSSSSSASTSGKMKSSK 1118
>AF015608-1|AAC39791.1| 305|Homo sapiens SR protein protein.
Length = 305
Score = 31.1 bits (67), Expect = 5.4
Identities = 31/92 (33%), Positives = 43/92 (46%)
Frame = -2
Query: 419 GTT*EPSHRSRWKLRTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLA 240
G T E S + R + +TR S+S ++R SS S +G+ S SSS+ + +
Sbjct: 47 GATKESSEKDRGRDKTRKRGSASSGSSSTRSR--SSSTSSSGSSTSTGSSSGSSSSSASS 104
Query: 239 TKGSTSELTHRHSPLSFSPDLLSGSRFRSGGR 144
GS+S T R S S S S SR R R
Sbjct: 105 RSGSSS--TSRSSSSSSSSGSPSPSRRRHDNR 134
>AB051472-1|BAB21776.2| 1505|Homo sapiens KIAA1685 protein protein.
Length = 1505
Score = 31.1 bits (67), Expect = 5.4
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Frame = -2
Query: 389 RWKLRTRPSRPNGKPSTSPKARH--YGSS*SINGAFRH-HKHRSPSSSNPSLATKGSTSE 219
+W+ R + RP +P +P G + F H +HR SS+ S +G E
Sbjct: 1 QWQ-RQQEDRPPHRPPRAPPPPLPLLGCPPGLTSLFSHLSRHRGKSSAGQS--RQGGRPE 57
Query: 218 LTHRHSPLSFSPDLLSGSRFRSGGRFCEA 132
H P+S PD+ R + G + EA
Sbjct: 58 PGHGSLPVSSRPDMREKGRRKKGRTWAEA 86
>U77718-1|AAB48304.1| 743|Homo sapiens pinin protein.
Length = 743
Score = 30.3 bits (65), Expect = 9.4
Identities = 28/84 (33%), Positives = 39/84 (46%)
Frame = -2
Query: 395 RSRWKLRTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSEL 216
RSR + R R ++ + S+S + +S S + S SSS+ S +T GS
Sbjct: 587 RSRGRTRNRTTKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGS---- 642
Query: 215 THRHSPLSFSPDLLSGSRFRSGGR 144
+ R S S S S SR RS GR
Sbjct: 643 SSRDSSSSTSSS--SESRSRSRGR 664
>BC062602-1|AAH62602.1| 717|Homo sapiens pinin, desmosome
associated protein protein.
Length = 717
Score = 30.3 bits (65), Expect = 9.4
Identities = 28/84 (33%), Positives = 39/84 (46%)
Frame = -2
Query: 395 RSRWKLRTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSEL 216
RSR + R + S+ + S+S + +S S + S SSS+ S +T GS
Sbjct: 561 RSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGS---- 616
Query: 215 THRHSPLSFSPDLLSGSRFRSGGR 144
+ R S S S S SR RS GR
Sbjct: 617 SSRDSSSSTSSS--SESRSRSRGR 638
>AK223612-1|BAD97332.1| 717|Homo sapiens pinin, desmosome
associated protein variant protein.
Length = 717
Score = 30.3 bits (65), Expect = 9.4
Identities = 28/84 (33%), Positives = 39/84 (46%)
Frame = -2
Query: 395 RSRWKLRTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSEL 216
RSR + R + S+ + S+S + +S S + S SSS+ S +T GS
Sbjct: 561 RSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGS---- 616
Query: 215 THRHSPLSFSPDLLSGSRFRSGGR 144
+ R S S S S SR RS GR
Sbjct: 617 SSRDSSSSTSSS--SESRSRSRGR 638
>AF195139-1|AAG33941.1| 717|Homo sapiens pinin protein.
Length = 717
Score = 30.3 bits (65), Expect = 9.4
Identities = 28/84 (33%), Positives = 39/84 (46%)
Frame = -2
Query: 395 RSRWKLRTRPSRPNGKPSTSPKARHYGSS*SINGAFRHHKHRSPSSSNPSLATKGSTSEL 216
RSR + R + S+ + S+S + +S S + S SSS+ S +T GS
Sbjct: 561 RSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGS---- 616
Query: 215 THRHSPLSFSPDLLSGSRFRSGGR 144
+ R S S S S SR RS GR
Sbjct: 617 SSRDSSSSTSSS--SESRSRSRGR 638
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,356,780
Number of Sequences: 237096
Number of extensions: 1823175
Number of successful extensions: 8064
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 7741
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8039
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10984231046
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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