Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_D21
(860 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex p... 31 0.28
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr... 29 0.85
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 2.6
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 27 2.6
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 3.4
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 4.5
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 4.5
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 7.9
>SPBC20F10.01 |gar1|SPBC25H2.01c|snoRNP pseudouridylase complex
protein Gar1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 194
Score = 30.7 bits (66), Expect = 0.28
Identities = 19/61 (31%), Positives = 22/61 (36%), Gaps = 1/61 (1%)
Frame = -2
Query: 562 GXGXXGGQGGXRGXXXXGRGGGAGXAXRXXXXGXXXXXXAARRXXXXRGAKAG-XGGXXG 386
G GG+GG RG RGG G + G R G + G GG G
Sbjct: 133 GPAGRGGRGGFRGGRGGSRGGFGGNSRGGFGGGSRGGFGGGSRGGSRGGFRGGSRGGFRG 192
Query: 385 R 383
R
Sbjct: 193 R 193
>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 305
Score = 29.1 bits (62), Expect = 0.85
Identities = 17/57 (29%), Positives = 18/57 (31%)
Frame = -2
Query: 556 GXXGGQGGXRGXXXXGRGGGAGXAXRXXXXGXXXXXXAARRXXXXRGAKAGXGGXXG 386
G GG G RG GRGG G G RG + G G G
Sbjct: 9 GGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRG 65
Score = 28.7 bits (61), Expect = 1.1
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 562 GXGXXGGQGGXRGXXXXGRGGGAG 491
G G G +GG RG GRGG G
Sbjct: 29 GGGRGGARGGGRGGARGGRGGRGG 52
Score = 27.9 bits (59), Expect = 2.0
Identities = 20/58 (34%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Frame = -2
Query: 556 GXXGGQGGXRGXXXXGRGGGAGXAXRXXXXGXXXXXXAARRXXXXR-GAKAGXGGXXG 386
G GG+GG RG G GG G AR R GA+ G GG G
Sbjct: 6 GSRGGRGGSRG-GRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSG 62
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 2.6
Identities = 16/46 (34%), Positives = 17/46 (36%), Gaps = 1/46 (2%)
Frame = +2
Query: 428 PXXPGCXLLXSXSTXXXPXCXPRXPPPPXALX-PSXPPLAPXXPXP 562
P P S P PPPP A P+ PP AP P P
Sbjct: 1691 PVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLP 1736
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 27.5 bits (58), Expect = 2.6
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = -3
Query: 561 GXGXXGARGGXEGXXAXGGGGXRG 490
G G G RGG G GGG RG
Sbjct: 452 GRGGFGGRGGFGGRGGFGGGRGRG 475
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = -2
Query: 562 GXGXXGGQGGXRGXXXXGRGG 500
G G GG+GG G GRGG
Sbjct: 458 GRGGFGGRGGFGGGRGRGRGG 478
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.1 bits (57), Expect = 3.4
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 492 PAPPPRPXXXXPLXPPWPP 548
P PPP P P PP PP
Sbjct: 750 PVPPPAPIMGGPPPPPPPP 768
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 492 PAPPPRPXXXXPLXPPWPP 548
P PPP P P PP PP
Sbjct: 10 PPPPPPPGFEPPSQPPPPP 28
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/45 (28%), Positives = 14/45 (31%)
Frame = +3
Query: 492 PAPPPRPXXXXPLXPPWPPXXPXPXXXXXXXPXXXXXYTXPPXPP 626
P+ PP P PP PP P P P PP
Sbjct: 433 PSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPP 477
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 25.8 bits (54), Expect = 7.9
Identities = 17/56 (30%), Positives = 17/56 (30%)
Frame = +3
Query: 396 PPXPAXAPRXXXXRLAAXXXXXXPXXXXRXAXPAPPPRPXXXXPLXPPWPPXXPXP 563
PP PA AP A P A PP PP PP P P
Sbjct: 151 PPSPASAPPIPSK--APPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPPMPPKVPPP 204
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,396,140
Number of Sequences: 5004
Number of extensions: 16942
Number of successful extensions: 107
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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