Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_D19
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    32   0.078
SPBC16D10.07c |sir2||Sir2 family histone deacetylase Sir2|Schizo...    29   0.73 
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    26   6.8  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   6.8  

>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 32.3 bits (70), Expect = 0.078
 Identities = 17/46 (36%), Positives = 21/46 (45%)
 Frame = +2

Query: 104 DLQTATRPKET*QLKSSCFANESTTRSESRPAEKIRRETQRADSWV 241
           +L   T P +     SSC  +ES    ES PA K   E    DSW+
Sbjct: 284 NLDLKTCPVDGILFSSSCLLDESMVTGESVPARKFPLEDNSLDSWM 329


>SPBC16D10.07c |sir2||Sir2 family histone deacetylase
           Sir2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 475

 Score = 29.1 bits (62), Expect = 0.73
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -1

Query: 479 GTSLRLCVMIIALSLPPLTTPRILITQEPVTVDSLDTS 366
           GTSL++  +   +S+ P TTP+I I++ PV     D +
Sbjct: 373 GTSLKVAPVSELISVIPPTTPQIYISRTPVRHTQFDVN 410


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 143 LKSSCFANESTTRSESRPAEKIRRETQRADSWVRLHGELFVEFDE 277
           L  +CF     TR   + A   + E +   S VR +G + VEF +
Sbjct: 484 LARNCFLPMVVTRGSDQVAISSKFEARNDPSVVRNYGNILVEFSK 528


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 434 PPLTTPRILITQEPVTVDSLDTSLRIHQIQ*PLH*TP 324
           PP+ +PR     +PV V+++  S  +   Q PLH +P
Sbjct: 270 PPIPSPR---PPQPVAVEAIQQSRAVISQQLPLHVSP 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,679,652
Number of Sequences: 5004
Number of extensions: 49019
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)