Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_D17
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces pomb...    46   5e-06
SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces po...    30   0.49 
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    28   1.5  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   2.6  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    26   6.1  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    26   6.1  

>SPBC365.05c |slu7||splicing factor Slu7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 46.4 bits (105), Expect = 5e-06
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 1/97 (1%)
 Frame = -3

Query: 624 DPNSAYYDPQDSXYERQPPLLTYPESEYGGENSVRVSG-DTAQHAAAQLFAWEARAHGLD 448
           D  +  Y+P+      +       +S  GG   V+ SG +       Q+FAWEA   G  
Sbjct: 234 DNKNLQYEPKSRSMRDETGYHMVDDSS-GGAGFVKASGGEKEDFEKLQMFAWEAERSGTR 292

Query: 447 LHLLAEPTKLQMLQAHYKRDQQRYKSQVKQSILEKYG 337
           +H++A PT  ++     K  +   +  + QSIL++YG
Sbjct: 293 VHVVANPTAGELEFRKNKASRMTTQKHIDQSILDRYG 329


>SPCC306.03c |cnd2||condensin subunit Cnd2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 742

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 22/67 (32%), Positives = 31/67 (46%)
 Frame = -3

Query: 630 NXDPNSAYYDPQDSXYERQPPLLTYPESEYGGENSVRVSGDTAQHAAAQLFAWEARAHGL 451
           N D     Y   DS   +Q PLLT P S   G+N +     TA+ A   +  +  RA  +
Sbjct: 576 NVDEGIPPYGFGDSDSPKQTPLLTPPSSSGFGDNLLL----TARLAKPDMLNYAKRAKKV 631

Query: 450 DLHLLAE 430
           D+ +L E
Sbjct: 632 DVRVLKE 638


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +2

Query: 44   VDNFLSSDTGSTTVFPASPTQYDIFIKE*QHL*PHWPSRQYEPQTVVW 187
            ++NFLS    S+   PA   +Y+   +   +  PHW  +Q E Q  +W
Sbjct: 1192 IENFLSPSFKSS--IPAIAKKYNFEYEYITYNWPHWLRKQEEKQREIW 1237


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
 Frame = -3

Query: 633 GNXDPNSAYYDPQDSXYERQPPLLTYPESEYGGENS--VRVSGDTAQHAA 490
           G  +PN  Y+ P  +     P  ++ P + YG  +S    VS     HAA
Sbjct: 231 GAQEPNRGYFSPMHTYSSAVPGPISVPSAPYGRASSTIAEVSPMYGSHAA 280


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -3

Query: 384 QRYKSQVKQSILEKYGGEEHLQSVPREL 301
           Q  +  VK+   EKYG   H+  VP EL
Sbjct: 527 QELEQDVKEECDEKYGKVVHIAVVPNEL 554


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +2

Query: 227 SCFSAPLTSVPSLL*RVNTSVWASSSSLGTDWRCSSPPYFS 349
           S F++  +S  + L   NTSV  + +  G+    SSPP++S
Sbjct: 310 SSFTSSSSSYTTTLTASNTSVTYTGTGTGSATFTSSPPFYS 350


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,590,358
Number of Sequences: 5004
Number of extensions: 46499
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)