Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_D17
(869 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0189 + 1578935-1578950,1579227-1579390,1579493-1579605,157... 154 8e-38
11_06_0151 - 20643032-20643085,20643202-20643307,20643415-206434... 30 2.8
12_02_0381 + 18376045-18376114,18376270-18376420,18376524-183766... 29 4.8
01_06_0864 - 32546696-32546803,32546881-32546961,32547134-325472... 29 6.4
06_01_0263 + 1936927-1936936,1937031-1937305,1937727-1938079,193... 28 8.5
03_03_0105 + 14491198-14493636,14494793-14494957,14495647-144957... 28 8.5
>08_01_0189 +
1578935-1578950,1579227-1579390,1579493-1579605,
1579850-1580399,1580514-1580813,1581093-1581133,
1581359-1581606,1581983-1582086,1582177-1582323
Length = 560
Score = 154 bits (374), Expect = 8e-38
Identities = 82/206 (39%), Positives = 110/206 (53%), Gaps = 25/206 (12%)
Frame = -3
Query: 630 NXDPNSAYYDPQDSXYERQPPLLTYPESE-YGGENSVRVSGDTAQHAAAQLFAWEARAHG 454
N D NSAYYDP+ P P + Y G+N R+SG + + AWEA G
Sbjct: 250 NLDVNSAYYDPKTRSMREDPLPDADPNDKFYVGDNQNRLSGQALEFKQLNIHAWEAFDKG 309
Query: 453 LDLHLLAEPTKLQMLQAHYKRDQQRYKSQVKQSILEKYGGEEHLQSVPRELLLAQTEVFT 274
D+H+ A P++ ++L +K +++ KS+ K I+EKYG + +PRELLL Q+E
Sbjct: 310 QDIHMQAAPSQAELLFKSFKIKKEKLKSENKDKIMEKYGNAASEEPIPRELLLGQSEKEI 369
Query: 273 RYNRDGTLVSG------------------------AEKQLAKSKYEEDALINNHTTVWGS 166
Y+R G ++ G + L KSKYEED INNHTTVWGS
Sbjct: 370 EYDRTGRIIKGQLTSSISHQMTRSLSSWILKVHFIQDVALPKSKYEEDVFINNHTTVWGS 429
Query: 165 YWRDGQWGYKCCHSFIKMSYCVGEAG 88
+W+D QWGYKCC I+ SYC G AG
Sbjct: 430 WWKDHQWGYKCCKQTIRNSYCTGLAG 455
>11_06_0151 -
20643032-20643085,20643202-20643307,20643415-20643495,
20643588-20643715,20643829-20643903,20644853-20645374,
20646622-20646687,20647990-20648076,20648173-20648247,
20648705-20648821,20648932-20649015,20649152-20649217,
20649352-20649417,20650079-20650150,20650231-20650332,
20650428-20650605,20650700-20650755,20653159-20653269,
20653354-20653422,20653558-20653741,20653826-20653914,
20654070-20654147,20654509-20654631,20654755-20654874,
20654975-20655055,20655285-20655431,20655533-20655611,
20657114-20657223,20659138-20659236,20659467-20659582,
20659673-20659781,20659839-20660069,20660152-20660417,
20661349-20661506,20661601-20661751,20661897-20661966,
20662203-20662232
Length = 1451
Score = 29.9 bits (64), Expect = 2.8
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Frame = -3
Query: 399 YKRDQQRY-KSQVKQSILEKYGGEEHLQSVPRELLLAQTEVFTRYNRDGTLV 247
YK D +R K K+++ E+YGGEE L + A + FT+Y+ LV
Sbjct: 448 YKFDDERVTKEDTKKALEEQYGGEEELPQINPGFNNAPFK-FTKYSNAYMLV 498
>12_02_0381 +
18376045-18376114,18376270-18376420,18376524-18376681,
18378680-18378945,18379025-18379243,18379309-18379417,
18379488-18379603,18379935-18380033,18381447-18381556,
18382928-18383006,18383127-18383273,18383363-18383443,
18383529-18383648,18383902-18384024,18384276-18384353,
18384459-18384547,18384653-18384761,18385018-18385086,
18385200-18385310,18385657-18385712,18385808-18385985,
18386065-18386166,18386243-18386314,18386489-18386554,
18386674-18386739,18386853-18386936,18387080-18387196,
18388077-18388163,18389321-18389341
Length = 1050
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 399 YKRDQQRY-KSQVKQSILEKYGGEEHLQSV 313
YK D +R K K+++ E+YGGEE L +
Sbjct: 434 YKFDDERVTKEDTKKALEEQYGGEEELPQI 463
>01_06_0864 -
32546696-32546803,32546881-32546961,32547134-32547250,
32548264-32548338,32548618-32548680,32549122-32549187,
32549254-32549325,32549403-32549504,32549588-32549765,
32549871-32549926,32551578-32551688,32551797-32551865,
32551960-32552068,32552176-32552327,32552398-32552475,
32554257-32554379,32555527-32555646,32555729-32555809,
32555881-32556027,32556112-32556190,32557223-32557297,
32558004-32558113,32558984-32559082,32559700-32559815,
32559914-32560022,32560098-32560229,32560389-32560591,
32561428-32561585,32561668-32561797,32562529-32562607,
32562806-32562829
Length = 1073
Score = 28.7 bits (61), Expect = 6.4
Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
Frame = -3
Query: 399 YKRDQQRY-KSQVKQSILEKYGGEEHL 322
YK D +R K +K+++ E+YGGEE L
Sbjct: 413 YKFDDERVTKEDMKRALEEQYGGEEEL 439
>06_01_0263 + 1936927-1936936,1937031-1937305,1937727-1938079,
1938598-1938715,1938823-1938946,1939389-1939608,
1939948-1940017,1940083-1940136,1940536-1940604,
1941138-1941194,1941503-1941575,1942037-1942080,
1942629-1942751,1943092-1943321,1943552-1943660,
1944196-1944339,1944443-1944604,1944921-1945197,
1945326-1945486,1945591-1945782,1946789-1946971,
1946986-1947063,1947187-1947366,1947476-1947562
Length = 1130
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 370 AGETIDSGKVWR*GAPPVRTQGAAAGPDRSVHPLQQ 263
+G + S K+WR +PPVRT+ G D+ +Q+
Sbjct: 1080 SGASFVSLKLWR-SSPPVRTEQQKGGVDKGTRYMQE 1114
>03_03_0105 + 14491198-14493636,14494793-14494957,14495647-14495760,
14496223-14496487,14497164-14497237,14497851-14497928
Length = 1044
Score = 28.3 bits (60), Expect = 8.5
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 12/69 (17%)
Frame = -3
Query: 513 GDTAQHAAAQLFAWEARAHGLDLHLLA-----------EPTKLQMLQ-AHYKRDQQRYKS 370
GD AQ+ A+L A+ +G+D H L + + MLQ YKRD +
Sbjct: 976 GDPAQYLVAELLCRAAKKNGMDFHELLDIPQGDRRKYHDDVSVMMLQKGMYKRDTSLFLR 1035
Query: 369 QVKQSILEK 343
++K I+ +
Sbjct: 1036 ELKSLIMNE 1044
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,290,521
Number of Sequences: 37544
Number of extensions: 391770
Number of successful extensions: 1232
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1186
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1230
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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