Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_D16
(810 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 221 7e-59
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 219 4e-58
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 160 2e-40
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 101 1e-22
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 97 3e-21
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 36 0.007
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 32 0.084
SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce... 32 0.11
SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyc... 31 0.15
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 31 0.15
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 31 0.26
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 31 0.26
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 31 0.26
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 31 0.26
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 30 0.34
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 29 0.59
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 29 0.78
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 29 1.0
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c... 29 1.0
SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1 |Sc... 28 1.4
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac... 28 1.4
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom... 28 1.8
SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch... 27 2.4
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 27 2.4
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 3.2
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 27 3.2
SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein Ph... 27 4.2
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy... 27 4.2
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb... 27 4.2
SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos... 27 4.2
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 27 4.2
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 27 4.2
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 27 4.2
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 27 4.2
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch... 27 4.2
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 5.5
SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch... 26 5.5
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po... 26 5.5
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi... 26 5.5
SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces pombe... 26 7.3
SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 26 7.3
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc... 26 7.3
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 26 7.3
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy... 26 7.3
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 9.6
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual 25 9.6
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||... 25 9.6
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 25 9.6
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 9.6
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 221 bits (541), Expect = 7e-59
Identities = 109/186 (58%), Positives = 136/186 (73%), Gaps = 2/186 (1%)
Frame = -2
Query: 791 TYFETQPGVXIQVFGGXXXYDPKITXCSV--NSS*PGIPPAPRGVPQIEVTXDIDANGIL 618
TY + QPGV IQVF G + C++ GIPPAPRGVPQIEVT D+DANGIL
Sbjct: 428 TYADNQPGVLIQVFEGERA---RTKDCNLLGKFELSGIPPAPRGVPQIEVTFDVDANGIL 484
Query: 617 NVSAIEKSTNKENKITITNDKXRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYC 438
NVSA+EK T K KITITNDK RLSKEEI+RMV+EAEKY+ ED+ + IQAKN LESY
Sbjct: 485 NVSALEKGTGKTQKITITNDKGRLSKEEIDRMVSEAEKYKAEDEAETSRIQAKNHLESYA 544
Query: 437 FSMKSTMEDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKELEGICNPI 258
+S++++++D LK+K+ SDK+ I +TI+WLD N A K+EYE KQKELEG+ NPI
Sbjct: 545 YSLRNSLDDPNLKDKVDASDKEAIDKAVKETIEWLDHNTTAAKDEYEDKQKELEGVANPI 604
Query: 257 ITKMYQ 240
+ K+YQ
Sbjct: 605 MAKIYQ 610
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 219 bits (535), Expect = 4e-58
Identities = 108/186 (58%), Positives = 136/186 (73%), Gaps = 2/186 (1%)
Frame = -2
Query: 791 TYFETQPGVXIQVFGGXXXYDPKITXCSV--NSS*PGIPPAPRGVPQIEVTXDIDANGIL 618
TY + QPGV IQVF G + C++ GIPPAPRGVPQIEVT D+DANGIL
Sbjct: 428 TYSDNQPGVLIQVFEGERA---RTKDCNLLGKFELSGIPPAPRGVPQIEVTFDVDANGIL 484
Query: 617 NVSAIEKSTNKENKITITNDKXRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYC 438
NVSA+EK T K KITITNDK RLSKEEI+RMV EAEKY+ ED+ + IQAKN LESY
Sbjct: 485 NVSALEKGTGKTQKITITNDKGRLSKEEIDRMVAEAEKYKAEDEAESGRIQAKNHLESYA 544
Query: 437 FSMKSTMEDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKELEGICNPI 258
+S++++++D LK+K+ SDK+T+ +TI+WLDSN A K+E+E KQKELE + NPI
Sbjct: 545 YSLRNSLDDPNLKDKVDASDKETVDKAVKETIEWLDSNTTAAKDEFEAKQKELESVANPI 604
Query: 257 ITKMYQ 240
+ K+YQ
Sbjct: 605 MAKIYQ 610
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 160 bits (388), Expect = 2e-40
Identities = 77/152 (50%), Positives = 108/152 (71%), Gaps = 3/152 (1%)
Frame = -2
Query: 689 GIPPAPRGVPQIEVTXDIDANGILNVSAIEKS-TNKENKITITNDKXRLSKEEIERMVNE 513
GIPPAPRGVPQIEVT ++DANG+L VSA++KS K K+ I NDK RLS+E+IERMV E
Sbjct: 490 GIPPAPRGVPQIEVTFEVDANGVLTVSAVDKSGKGKPEKLVIKNDKGRLSEEDIERMVKE 549
Query: 512 AEKYRNEDDKQKETIQAKNALESYCFSMKSTM-EDEKLKEKISDSDKQTILDKCNDTIKW 336
AE++ ED KE I+A+N LE+Y +S+K +DE+L K+ DKQ +LD D +W
Sbjct: 550 AEEFAEEDKILKERIEARNTLENYAYSLKGQFDDDEQLGGKVDPEDKQAVLDAVEDVAEW 609
Query: 335 LD-SNQLADKEEYEHKQKELEGICNPIITKMY 243
L+ + A KEE+E ++++L+ + +PI K+Y
Sbjct: 610 LEIHGEDASKEEFEDQRQKLDAVVHPITQKLY 641
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 101 bits (242), Expect = 1e-22
Identities = 65/188 (34%), Positives = 101/188 (53%), Gaps = 4/188 (2%)
Frame = -2
Query: 791 TYFETQPGVXIQVFGGXXXY--DPKITXCSVNSS*PGIPPAPRGVPQIEVTXDIDANGIL 618
T + Q V I+VF G D K+ N GI PAP+G PQIEV+ D+DA+GI+
Sbjct: 471 TAADGQTAVEIRVFQGERELVRDNKLIG---NFQLTGIAPAPKGQPQIEVSFDVDADGII 527
Query: 617 NVSAIEKSTNKENKITITNDKXRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYC 438
NVSA +K+TNK++ IT+ L+ EIE MV +AEKYR D +KE I+ N ES C
Sbjct: 528 NVSARDKATNKDSSITVAGSSG-LTDSEIEAMVADAEKYRASDMARKEAIENGNRAESVC 586
Query: 437 FSMKSTME--DEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKELEGICN 264
++S ++ +KL ++ + + I D K ++ E+ + K E++ +
Sbjct: 587 TDIESNLDIHKDKLDQQAVEDLRSKITDLRETVAKVNAGDEGITSEDMKKKIDEIQQLSL 646
Query: 263 PIITKMYQ 240
+ +Y+
Sbjct: 647 KVFESVYK 654
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 96.7 bits (230), Expect = 3e-21
Identities = 46/125 (36%), Positives = 77/125 (61%), Gaps = 3/125 (2%)
Frame = -2
Query: 689 GIPPAPRGVPQIEVTXDIDANGILNVSAIEKSTNKENKITITNDKXRLSKEEIERMVNEA 510
GIPP PRG ++E T ++DANGIL V+A+EK+T + I ITN LS +I+ M+ A
Sbjct: 466 GIPPMPRGQAELEATFELDANGILKVTAVEKTTGRSAHIEITNSVGHLSSTKIQEMIENA 525
Query: 509 EKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTI---LDKCNDTIK 339
+K++ +D + ++AK+ LESY ++++T+ + + K+ DK I L +C ++
Sbjct: 526 DKFKQQDKDFAKKLEAKSQLESYISNIETTISEPNVMMKLKRGDKSKIEAQLAECMSQLE 585
Query: 338 WLDSN 324
D+N
Sbjct: 586 LEDTN 590
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 35.9 bits (79), Expect = 0.007
Identities = 32/118 (27%), Positives = 53/118 (44%), Gaps = 4/118 (3%)
Frame = -2
Query: 599 KSTNKENKITITNDKXRLSKEEIERMVNEAEKYRNEDDKQ-KETIQAKNALESYCFSMKS 423
K K ++++ + RL E +E+ EAE DK ET+ KNALE Y + ++
Sbjct: 534 KKLVKVADLSVSVQEDRLPTEVLEKY-REAEHQMIATDKLVAETVDRKNALEEYIYDTRA 592
Query: 422 TMED--EKLKEKISDSDKQTILDKCNDTIKWL-DSNQLADKEEYEHKQKELEGICNPI 258
++D + S + +L K D WL + + K Y K ++L + PI
Sbjct: 593 KLDDIYAPFTNEEESSKFKEMLTKAED---WLYEEGEDTTKAVYTAKLEDLMRVGGPI 647
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 32.3 bits (70), Expect = 0.084
Identities = 15/61 (24%), Positives = 35/61 (57%)
Frame = -2
Query: 539 EEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILD 360
EE++ +NEA+K NE ++ I+ +L+ +++ +++ + + S KQT+++
Sbjct: 19 EELDAKINEAKKRFNEHKEKLGAIRGGGSLQEKNAELRAELDNIRNAQAAIRSSKQTLIN 78
Query: 359 K 357
K
Sbjct: 79 K 79
>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 190
Score = 31.9 bits (69), Expect = 0.11
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Frame = -2
Query: 635 DANGILNVSAIEKSTNKENKITITNDKXRLSKEEIERMVNEAEKYRNEDDKQKE--TIQA 462
D LNVS + S +E +T ++ R+ +EE +RM ++ E K+K T+Q
Sbjct: 58 DLENTLNVSGTKDSNAEEQPAKLTKEEKRVEREEAKRMASKVLIKTIERTKRKRVTTVQG 117
Query: 461 KNA 453
+A
Sbjct: 118 LDA 120
>SPBC1734.01c ||SPBC337.17c|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 31.5 bits (68), Expect = 0.15
Identities = 23/69 (33%), Positives = 35/69 (50%)
Frame = -2
Query: 590 NKENKITITNDKXRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMED 411
NK+ K T D SKEE+E +V E E D +Q + K+ L++ F ++
Sbjct: 529 NKKGKHTQIEDPTAASKEELENLVREDE----NDSEQLDHFDMKSILKAEKFK-----KN 579
Query: 410 EKLKEKISD 384
KLK+K S+
Sbjct: 580 RKLKKKASN 588
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 31.5 bits (68), Expect = 0.15
Identities = 29/112 (25%), Positives = 48/112 (42%)
Frame = -2
Query: 611 SAIEKSTNKENKITITNDKXRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFS 432
S+I+K K T+ + + E+ + E EK + +A+ A
Sbjct: 206 SSIQKPKLKAEGSTLKGQALKKTLEDTWNNLTEEEKKPYHEGLLAAREKAREARRRRSAQ 265
Query: 431 MKSTMEDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKELE 276
+ +E EK KEK D D++ DT+ D NQ+ +E E QKE++
Sbjct: 266 NSAKLEKEKAKEKQKDKDQE------QDTVS--DKNQI---DEIEKGQKEVD 306
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 30.7 bits (66), Expect = 0.26
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
Frame = -2
Query: 614 VSAIEKSTNKENKITITNDKXRLSKEEI--ERMVNEAEKYRNEDDKQKETIQAKNALESY 441
V ++K +K++K N + E+ E ++EK ++ K + KNA ++
Sbjct: 70 VVPVKKKPSKKSKKAKANAFEAFADEQSVEEEEEEDSEKPVRKNKKSSKKASPKNAFDAL 129
Query: 440 CFSMKSTMEDEKLKEKISDSDKQTILDKC-NDTIKWLDSNQLADKEEYEHKQKE 282
M DE+ E S K+ K +D + LD + E+ + K+K+
Sbjct: 130 ADDMDDLSLDEEESESSEKSKKKKKKSKSKDDGSEALDDGDIESSEKDKKKKKK 183
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 30.7 bits (66), Expect = 0.26
Identities = 27/120 (22%), Positives = 52/120 (43%), Gaps = 4/120 (3%)
Frame = -2
Query: 620 LNVSAIEKSTNKENKITITNDKXRLSKEEIERMVN--EAEKYRNEDDKQKETIQAK-NAL 450
LNV +K N+IT T D S++E + N ++ D + + A
Sbjct: 10 LNVMKKKKPNESSNRITFTEDDSSSSEQEHAPIPNSFSSQITAASDASKDDNYDASIYGF 69
Query: 449 ESYCFSMKSTMEDEKLKEKISDSDKQ-TILDKCNDTIKWLDSNQLADKEEYEHKQKELEG 273
+ + SMKS ++ +++ D++ ++ ++ K + L +E K+ ELEG
Sbjct: 70 DEFYDSMKSAEREQMELKRLESKDRRPKYMENLIESAKKRKRDLLLARERALLKKNELEG 129
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 30.7 bits (66), Expect = 0.26
Identities = 24/93 (25%), Positives = 47/93 (50%), Gaps = 1/93 (1%)
Frame = -2
Query: 557 KXRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKL-KEKISDS 381
K R +E I + EAE+ + E ++Q+ Q K E + K E EKL KE+I
Sbjct: 82 KQRAQEERIRQ--KEAERLKREKERQQRE-QEKKLREQEKIAAKKMKELEKLEKERIRLQ 138
Query: 380 DKQTILDKCNDTIKWLDSNQLADKEEYEHKQKE 282
++Q ++ + ++ + Q +E+ +K+++
Sbjct: 139 EQQRRKEERDQKLREKEEAQRLRQEQILNKERQ 171
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 30.7 bits (66), Expect = 0.26
Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 5/93 (5%)
Frame = -2
Query: 602 EKSTNKENKITITNDKXRLSKEE-----IERMVNEAEKYRNEDDKQKETIQAKNALESYC 438
E+ KE + ++ D+ +L + + + N+ E + DDKQ + KN+LE+
Sbjct: 1239 EERFEKEKRRIMSEDRDKLIRGRQKTSIVAKYRNKRELPEDSDDKQDTASKDKNSLETID 1298
Query: 437 FSMKSTMEDEKLKEKISDSDKQTILDKCNDTIK 339
M+ + E K D ++ LDK D K
Sbjct: 1299 EKMEDASKIEG-DAKTGDDNEMEDLDKMEDLEK 1330
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 30.3 bits (65), Expect = 0.34
Identities = 23/90 (25%), Positives = 43/90 (47%)
Frame = -2
Query: 545 SKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTI 366
+KEE+E +NE + E ++Q + ++N ++ +K +E EKLKE ++ D
Sbjct: 1606 TKEELENQLNEKSQRIKELEEQAQKNSSENTHDNIDDMIKQQVE-EKLKENSANFDV--- 1661
Query: 365 LDKCNDTIKWLDSNQLADKEEYEHKQKELE 276
K + + A YE K ++L+
Sbjct: 1662 --KLKKVVAETEFRSKAKISVYEKKTRDLQ 1689
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 29.5 bits (63), Expect = 0.59
Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 3/105 (2%)
Frame = -2
Query: 569 ITNDKXRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKI 390
+ +K SKE ++ EAE+ E +E + + + S K +++ LK K
Sbjct: 433 LEREKDEASKERLKAARKEAEQVEEETRPIREKYELEKSRGSELQDAKRRLDE--LKAKA 490
Query: 389 SDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQK---ELEGICN 264
D++++ D +K+ L + EY +QK + E I N
Sbjct: 491 EDAERRNDFTLAAD-LKYYGIPDLQKRIEYLEQQKRKADAEAIAN 534
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 29.1 bits (62), Expect = 0.78
Identities = 22/107 (20%), Positives = 48/107 (44%), Gaps = 7/107 (6%)
Frame = -2
Query: 605 IEKSTNKENKITITNDKXRLSK-EEIERMVNEAEKYRNEDDKQKETIQAKNAL------E 447
IE EN++ I N L K +++ R ++ +N+++ +++ A + L
Sbjct: 793 IEHCKLSENQLEIYNRYAALQKNQQLRRDDKRNKRSKNDEESDGKSLSAGHVLMQLRKAA 852
Query: 446 SYCFSMKSTMEDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADKE 306
++ + +DEKLK+ D ++ N+ + D ++D E
Sbjct: 853 NHALLFRKFYDDEKLKQMAKDIMQEEQYKNANEQYIYEDMEVMSDFE 899
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 28.7 bits (61), Expect = 1.0
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -2
Query: 401 KEKISDSDKQTILD-KCNDTIKWLDSNQLADKEEYEHKQKELE 276
+EKI +++TI D K + + ++ EEY KQKEL+
Sbjct: 427 EEKIDSDEEETIDDAKSEMFVDLSEEEEVRQYEEYRKKQKELQ 469
>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1274
Score = 28.7 bits (61), Expect = 1.0
Identities = 35/152 (23%), Positives = 69/152 (45%), Gaps = 3/152 (1%)
Frame = -2
Query: 722 ITXCSVNSS*PGIPPAPRGVPQIEVTXDIDANGILNVSAIEKSTNKENKITITNDKXRLS 543
I V+ PG+ G+P+ + D G ++ S + + + +TIT R
Sbjct: 99 ILDTGVDPGAPGLSVTTTGLPKFKNIVDCTGAGDVDTSVEVAAADSNDYLTITGRSGRTL 158
Query: 542 KEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLK-EKISDSDKQTI 366
K +++++N K K + K A E + ++ + +KL+ E ++ S+++ +
Sbjct: 159 K--------LSKEWKNPSKKWK--VGCKLAYEFFPKDLRKRL--QKLETEDMNKSNRKLL 206
Query: 365 LDKCNDTIKWLDSNQLA--DKEEYEHKQKELE 276
D ++ K+ D A DK+ + QKELE
Sbjct: 207 QDATDEYAKFKDKFPEAPLDKDNLQ-TQKELE 237
>SPBC16E9.13 |ksp1|ppk20|serine/threonine protein kinase Ksp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -2
Query: 620 LNVSAIEKSTNKENKITITNDKXRLSKEEIERMVNEAEKYRNED 489
L VS ++S K + + K EE+E VNE E++R D
Sbjct: 257 LCVSPEKRSLAKTREAVLAVTKWTTDDEELESFVNEEEEFRASD 300
>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 797
Score = 28.3 bits (60), Expect = 1.4
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Frame = -2
Query: 542 KEEIERMVNEAEKYRNEDDKQ-KETIQAKNAL 450
KEE+E+ + +K RNE+ K+ KET+ NAL
Sbjct: 684 KEEVEK--KDGDKERNEEKKEEKETLPVLNAL 713
>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 633
Score = 27.9 bits (59), Expect = 1.8
Identities = 17/86 (19%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Frame = -2
Query: 539 EEIERMVNEAEKYRNEDDKQKETI-QAKNALESYCFSMKSTMEDEKLKEKISDSDKQTIL 363
+++E+M +K ++E+ ++ ETI Q + +E ++S +E+E +KE + +
Sbjct: 491 QKLEKMGGWMKKLQDENSEKTETIAQLEQIIEELHEELRS-LEEESIKESSATQQNENQH 549
Query: 362 DKCNDTIKWLDSNQLADKEEYEHKQK 285
+ + + + D + + K+K
Sbjct: 550 KRSSRKLLYEDKQAIQEAHTINTKRK 575
>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 509
Score = 27.5 bits (58), Expect = 2.4
Identities = 21/87 (24%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Frame = -2
Query: 629 NGILNVSAIEKSTNKENKITITNDKXRLSKEEIERMVNEAE-KYRNEDDKQKETIQAKNA 453
+GIL+ + IEK +K K+ + N+ SK+ + + + +E DK KN
Sbjct: 154 DGILSFTVIEKVDDKNLKVRVNNNGKISSKKGVNLPKTDVDLPALSEKDKADLRFGVKNG 213
Query: 452 LESYCFSMKSTMEDE-KLKEKISDSDK 375
++ S ED ++E + + K
Sbjct: 214 VDMIFASFIRRAEDVIHIREVLGEEGK 240
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Frame = -1
Query: 627 RYPQRFRYREVHQQGEQDHHYQRQXSS-LQGRDRAY 523
R P R +YRE H + + H R QGR +Y
Sbjct: 320 RDPDRTKYREYHSERRKQHRTDRYSDDYYQGRSYSY 355
Score = 25.4 bits (53), Expect = 9.6
Identities = 17/81 (20%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Frame = -2
Query: 629 NGILNVSAIEKSTNKENKITITNDKXRLSKEEIERMVNEAE---KYRNEDDKQKETIQAK 459
N I++ A + +NKI + + EE++ ++N+ K N + Q T
Sbjct: 107 NEIVDWKANNSNEKAQNKIATNKESTDILPEEVQLVLNDLNDDVKSANSANLQPITTNVV 166
Query: 458 NALESYCFSMKSTMEDEKLKE 396
N ++Y + E +K+
Sbjct: 167 NEKDAYRKDIDELPEPSNMKD 187
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.1 bits (57), Expect = 3.2
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = -2
Query: 563 NDKXRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNA-LESYCFSMKSTMEDEKLKEKIS 387
+DK + E + E YRNE +E++ +N L S +++ +E+ K ++++S
Sbjct: 635 DDKMKSIDESTRELEKNYEVYRNEMTAIQESLSKRNQDLLSEMEAIRKELENSKYQQQLS 694
Query: 386 DSDKQT 369
+D+ T
Sbjct: 695 -TDRLT 699
Score = 26.2 bits (55), Expect = 5.5
Identities = 22/93 (23%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Frame = -2
Query: 551 RLSKEEIERMVNEAEKYRNEDDKQKETIQAK-NALESYCFSMKSTMEDEKLKEKISDSDK 375
+L++E +ER+ E ++YR + + E K +LE ++ + L+ + D
Sbjct: 950 KLAEEMVERVKTEYDEYRLQTSESLEKNHLKITSLEQRIVILQDEIASSSLRCENITKDS 1009
Query: 374 QTILDKCNDTIKWLDSNQLAD--KEEYEHKQKE 282
+T + + K L +N+L+ E +H +KE
Sbjct: 1010 ETRVALLLEENKHL-NNELSSHRNAEKQHLEKE 1041
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 27.1 bits (57), Expect = 3.2
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -2
Query: 524 MVNEAEKYRNEDDKQKETIQAKNALESYCFSMKST 420
M+++ RN+ +KQ TI KNA++ Y S+K T
Sbjct: 247 MLSKLVSSRNKPNKQ--TILTKNAIQDYLVSLKIT 279
>SPAC30D11.08c |phf2|swp2, saf60|PHD finger containing protein
Phf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 538
Score = 26.6 bits (56), Expect = 4.2
Identities = 20/85 (23%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = -2
Query: 629 NGILNVSAIEK-STNKENKITITNDKXRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNA 453
NG + S K ST+ + + DK + E+I + ++Y NED+ + +++ A
Sbjct: 375 NGTESQSKTTKHSTSLPSTEPVEVDKQYMESEKIPTIDEYLQEYSNEDEIVLQVLESFPA 434
Query: 452 LESYCFSMKSTMEDEKLKEKISDSD 378
S+ ++ +T++ + KI +S+
Sbjct: 435 AVSFS-TITNTIQAKYSNRKIKNSN 458
>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 26.6 bits (56), Expect = 4.2
Identities = 15/27 (55%), Positives = 15/27 (55%)
Frame = +1
Query: 610 ETLRIPLASMSKVTSI*GTPRGAGGIP 690
E L PLA MS TSI G G GG P
Sbjct: 76 EVLVDPLADMSAGTSIMGNNFGFGGFP 102
>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 457
Score = 26.6 bits (56), Expect = 4.2
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = -2
Query: 560 DKXRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDS 381
D+ +EIE M + + + D + + N + CFS +ED K KE +SD
Sbjct: 208 DRTMEQLKEIEEMKDSNGMFCDADHVPLQGQELCNGILEECFSF---LEDAKTKEGLSDE 264
Query: 380 DKQT 369
K +
Sbjct: 265 MKSS 268
>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 425
Score = 26.6 bits (56), Expect = 4.2
Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Frame = -2
Query: 620 LNVS--AIEKSTNKENKITITNDKXRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALE 447
+NVS +EK T + +I + + + + M+++ +K R+ DDK E IQA +
Sbjct: 288 INVSEHTVEKVTIFDIRINTEDPRHSQIRSFLATMMSQ-DKIRSIDDKLTELIQAITYSQ 346
Query: 446 SYCFSMKSTMED--EKLKEKISDS--DKQTILDKCN 351
S MK E E + E I D + +LD N
Sbjct: 347 SKYDFMKKFSESPIEFINEWIESQSRDLEIVLDGTN 382
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 26.6 bits (56), Expect = 4.2
Identities = 21/88 (23%), Positives = 35/88 (39%)
Frame = -2
Query: 521 VNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNDTI 342
+NE + Y + + Q +T + L S C + S L + D + +L C I
Sbjct: 830 INETDNYDDNETTQSDTATSYEQLASVCVNELS--GKNVLFFYFLEDDSEKLLKACQHFI 887
Query: 341 KWLDSNQLADKEEYEHKQKELEGICNPI 258
DS + ++E K + I N I
Sbjct: 888 CVKDSIKRLGDNKFEDKSLRICTIPNSI 915
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 26.6 bits (56), Expect = 4.2
Identities = 19/79 (24%), Positives = 34/79 (43%)
Frame = -2
Query: 575 ITITNDKXRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKE 396
I +T + R S E V + E ++D + +++NA + S + + +KE
Sbjct: 240 IRLTRSRARSSNEA--SYVEKDESSNSDDSISYKRRRSRNAANRITDYVDSDLSESSMKE 297
Query: 395 KISDSDKQTILDKCNDTIK 339
K S +K DK + K
Sbjct: 298 KQSKIEKYMKSDKSSKNFK 316
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 26.6 bits (56), Expect = 4.2
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = -2
Query: 494 EDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNDTIKWL 333
E DK ET+ K A+ S+ +++++++ K+S D L+ CN+ + L
Sbjct: 242 ETDKFDETM--KEAILSF-----EDLKEQEIRRKVSSDDVHNYLESCNNHLSML 288
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 26.6 bits (56), Expect = 4.2
Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = -2
Query: 584 ENKITITNDKXRLSKEEIERM-VNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTME 414
++++TIT++ S E++E++ N AEK + E + K + ++ LES S + +E
Sbjct: 288 KSQMTITDE----SSEDLEKLHSNFAEKVKEEQELYKSLEKKRSDLESLLKSRRELLE 341
>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 703
Score = 26.6 bits (56), Expect = 4.2
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Frame = -2
Query: 596 STNKENKITITNDKXRLSKEEIERMVNEAEKYRNEDDKQK--ETIQAKNALESYCF 435
+TNK N + N L EEI V + E + DD+ + E +A ++ E Y F
Sbjct: 46 NTNKHNVYSTKNSMYLLGFEEILNTVLDCEPHIFTDDELRVIENFKALDSDERYLF 101
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 26.2 bits (55), Expect = 5.5
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 9/74 (12%)
Frame = -2
Query: 542 KEEIERMVNEAEKYRNEDD---------KQKETIQAKNALESYCFSMKSTMEDEKLKEKI 390
KE ER+ E + NED K+K IQ KN+ + + ST E K+ I
Sbjct: 487 KETPERLCTENQSTENEDQANLKESELPKEKSDIQPKNSRSTIEYIETSTRVYEMPKDTI 546
Query: 389 SDSDKQTILDKCND 348
K +I + +D
Sbjct: 547 PSRFKTSISTEVHD 560
>SPCC663.03 |pmd1||leptomycin efflux transporter
Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1362
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -2
Query: 557 KXRLSKEEIERMVNEAEKYRNEDD 486
K LSKEE+ER V +A K N D
Sbjct: 525 KGTLSKEELERRVYDAAKLANAYD 548
>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 270
Score = 26.2 bits (55), Expect = 5.5
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -3
Query: 232 EESPEVCRASRAEHPEPE 179
EE+P AS EHPEP+
Sbjct: 244 EEAPAAAAASENEHPEPK 261
>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
Usp104|Schizosaccharomyces pombe|chr 1|||Manual
Length = 695
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/41 (29%), Positives = 25/41 (60%)
Frame = -2
Query: 545 SKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKS 423
S+ E +++ E ++ ED+KQ E + K AL+ +C +++
Sbjct: 299 SETEQQQLFFEYKQKLLEDEKQLEKDRRKEALDDFCSLLRN 339
>SPCC1827.01c |||DUF1253 family protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 652
Score = 25.8 bits (54), Expect = 7.3
Identities = 21/76 (27%), Positives = 35/76 (46%)
Frame = -2
Query: 602 EKSTNKENKITITNDKXRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKS 423
EK +KE K ++ + E V ++ NE+D+Q E IQ Y +++S
Sbjct: 36 EKKDDKEKSSKKVQKKNKVIESLNEMEVEMEDENENENDEQ-EAIQ-------YYINVES 87
Query: 422 TMEDEKLKEKISDSDK 375
DE L ++ DS +
Sbjct: 88 QDADETLHQEAQDSSE 103
>SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 7.3
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 599 KSTNKENKITITNDKXRLSKEEIERMVNEAEKYRNEDDKQKET 471
K NK+++ + +K +L +E+ AEK N DDK + T
Sbjct: 39 KQKNKKSRNQVRREKKKLLREKTNSGAKLAEK--NSDDKDQLT 79
>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
Pre5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 272
Score = 25.8 bits (54), Expect = 7.3
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -2
Query: 491 DDKQKETI-QAKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLA 315
D ++E I A AL + E+ I +K T+ D+ NDT +WLD +L
Sbjct: 181 DSSREELILSALRALRDTLSKDQELTEENVSISVIGKDEKYTLYDQ-NDTKEWLD--KLG 237
Query: 314 DK 309
DK
Sbjct: 238 DK 239
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.8 bits (54), Expect = 7.3
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Frame = -2
Query: 575 ITITND-KXRLSKEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLK 399
I + D K S I V + E+ + D T+Q K +S FS K + E L
Sbjct: 383 IPVNQDFKALQSYRRILDSVIQPERKEGKLDNLINTLQDKK--KSSTFSKK---DREVLL 437
Query: 398 EKISDSDKQTILDKC 354
+KIS+ D QT ++C
Sbjct: 438 KKISEIDSQTSFEQC 452
>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 991
Score = 25.8 bits (54), Expect = 7.3
Identities = 13/61 (21%), Positives = 31/61 (50%)
Frame = -2
Query: 542 KEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTIL 363
+++I + + + E RNE+ ++++ ++ ESY ++ E ++ S K T +
Sbjct: 391 EDDIFKRLKQQEDRRNENYRRRQQRESNQESESYVDNVVIQRSVETQSTEVVTSSKSTSV 450
Query: 362 D 360
D
Sbjct: 451 D 451
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.4 bits (53), Expect = 9.6
Identities = 14/63 (22%), Positives = 29/63 (46%)
Frame = -2
Query: 542 KEEIERMVNEAEKYRNEDDKQKETIQAKNALESYCFSMKSTMEDEKLKEKISDSDKQTIL 363
+EE E+ + E K R + DK++E + + LE + + + K+ + + +
Sbjct: 694 REEEEKRILEERKRREKLDKEEEERRRRELLEKESEEKERRLREAKIAAFFAPNQTKEGS 753
Query: 362 DKC 354
D C
Sbjct: 754 DGC 756
>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
Length = 613
Score = 25.4 bits (53), Expect = 9.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 744 PPKYLDXYXGLGFKIGG 794
PP+YL+ L FKIGG
Sbjct: 521 PPEYLESSRSLQFKIGG 537
>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 504
Score = 25.4 bits (53), Expect = 9.6
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +2
Query: 221 RGLLRHPGTSSLLSDCKCLPILSA-CAH 301
R ++ H GT + D CLP SA C H
Sbjct: 122 REVVHHEGTCEICYDEGCLPFFSAECDH 149
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 9.6
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 461 KNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNDTIKW 336
K E YC S+ ST + + K +SD T+L T+ W
Sbjct: 284 KEVFEEYCKSVVSTKKITRRKNTLSDF--WTLLHSLPSTLLW 323
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.4 bits (53), Expect = 9.6
Identities = 24/111 (21%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Frame = -2
Query: 605 IEKSTNKENKITITNDKXRLSKEEI-ERMVNEAEKYRNEDDKQKETIQAKNALESYCFSM 429
IE NK +++ + + S E + + + N E + + ++ + L+S +
Sbjct: 992 IEHLKNKVSEVEVERNALLASNERLMDDLKNNGENIASLQTEIEKKRAENDDLQSKLSVV 1051
Query: 428 KSTMEDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKELE 276
S E+ L IS +++ DK N +K+++ N +E + + ELE
Sbjct: 1052 SSEYENLLL---ISSQTNKSLEDKTNQ-LKYIEKNVQKLLDEKDQRNVELE 1098
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,787,398
Number of Sequences: 5004
Number of extensions: 52812
Number of successful extensions: 290
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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