Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_D14
         (810 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    30   0.45 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   2.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   5.5  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   9.6  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 29.9 bits (64), Expect = 0.45
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +1

Query: 376  PPXPXXTPPXXXAPPAPXPPP 438
            PP P   PP   APP P  PP
Sbjct: 1708 PPPPMSVPPPPSAPPMPAGPP 1728



 Score = 26.6 bits (56), Expect = 4.2
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +1

Query: 379  PXPXXTPPXXXAPPAPXPPP 438
            P P   PP    PP+  PPP
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPP 1734


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 13/38 (34%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
 Frame = +1

Query: 361 PNXXXPPXPXXTP-PXXXAPPAPXPPPXXXXXXXPXXP 471
           P     P P   P P    PP P PPP       P  P
Sbjct: 742 PTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/32 (34%), Positives = 11/32 (34%)
 Frame = +1

Query: 376 PPXPXXTPPXXXAPPAPXPPPXXXXXXXPXXP 471
           PP P    P     P P PPP       P  P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765



 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/26 (42%), Positives = 11/26 (42%)
 Frame = +1

Query: 361 PNXXXPPXPXXTPPXXXAPPAPXPPP 438
           P    PP P   P    A P P PPP
Sbjct: 756 PIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 26.2 bits (55), Expect = 5.5
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +3

Query: 525 PAXXPXXXXGAXPXPXXPPPP 587
           P   P    GA P P  PPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 20/76 (26%), Positives = 21/76 (27%), Gaps = 1/76 (1%)
 Frame = +2

Query: 395 PXPXPXXHXPPXPXPXPXGXLSRXXPXXVLKTXXXXPXXXXNXXRQXPAXXXXGXP-XPP 571
           P P P       P   P G  SR     V       P    +     P     G P  PP
Sbjct: 389 PAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSAPPSLPMGAPAAPP 448

Query: 572 XXPSPPPRXXXPVXPP 619
             PS P     P   P
Sbjct: 449 LPPSAPIAPPLPAGMP 464



 Score = 26.2 bits (55), Expect = 5.5
 Identities = 20/84 (23%), Positives = 20/84 (23%), Gaps = 1/84 (1%)
 Frame = +1

Query: 394 TPPXXXAPPAPXP-PPXXXXXXXPXXPQXRX*NXXXXXTXXXXXXPPXXRXXXXGXXRPP 570
           TPP    P  P   PP       P  P                  PP           PP
Sbjct: 414 TPPVPTPPSLPPSAPPSLPPSAPPSLPMGAP--AAPPLPPSAPIAPPLPAGMPAAPPLPP 471

Query: 571 XXPLPPPXXXPXXXPPXXDSXSXP 642
             P PPP   P    P       P
Sbjct: 472 AAPAPPPAPAPAPAAPVASIAELP 495



 Score = 25.4 bits (53), Expect = 9.6
 Identities = 11/22 (50%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
 Frame = +1

Query: 376 PPXPXXTPPXXXAPPA-PXPPP 438
           PP P   P     PPA P PPP
Sbjct: 457 PPLPAGMPAAPPLPPAAPAPPP 478



 Score = 25.4 bits (53), Expect = 9.6
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +2

Query: 536 PAXXXXGXPXPPXXPSPPP 592
           PA      P PP  P+PPP
Sbjct: 460 PAGMPAAPPLPPAAPAPPP 478


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/38 (31%), Positives = 12/38 (31%)
 Frame = +1

Query: 361 PNXXXPPXPXXTPPXXXAPPAPXPPPXXXXXXXPXXPQ 474
           P     P P   P    AP  P PP        P  PQ
Sbjct: 584 PEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEVPSVPQ 621


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,684,673
Number of Sequences: 5004
Number of extensions: 21311
Number of successful extensions: 147
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 127
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)