Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_D14
         (810 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   4.4  
AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein pro...    23   4.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.4  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    23   4.4  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 561 PXPXXPPPPP 590
           P P  PPPPP
Sbjct: 339 PKPAPPPPPP 348


>AF134817-1|AAD40233.1|  105|Apis mellifera FABP-like protein
           protein.
          Length = 105

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 126 NLKGSILQPRPRMEVPCSWD 67
           NL  ++LQPRP  E+  + D
Sbjct: 25  NLVNTVLQPRPSFELSKNGD 44


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +1

Query: 361 PNXXXPPXPXXTPPXXXAPPAP 426
           P    PP P   PP    P AP
Sbjct: 34  PQRGSPPNPSQGPPPGGPPGAP 55


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -1

Query: 126 NLKGSILQPRPRMEVPCSWD 67
           NL  ++LQPRP  E+  + D
Sbjct: 27  NLVNTVLQPRPSFELSKNGD 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,229
Number of Sequences: 438
Number of extensions: 3304
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)