Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_D10
         (838 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    50   4e-07
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    27   2.5  
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.8  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    26   5.8  
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    26   5.8  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    26   5.8  

>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 26/60 (43%), Positives = 34/60 (56%)
 Frame = -1

Query: 541  LNYRHRHAQLAGRASVALNTHILFKNRVEIESAVVLAVKRXALQVLIPKYGLEGPLYLPS 362
            +NYRHR AQ+AGRAS+        K  V  E A V+ V +    V I ++GLEG +Y  S
Sbjct: 849  INYRHRMAQMAGRASIEYYVGQALKGGVAEEDAYVIKVFKNGFVVFIARFGLEGIVYTKS 908


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 396 NMDWKDLCIYHLXNSRIMKRNTF 328
           N+D  DLC+  L   +I+K +TF
Sbjct: 100 NVDGADLCVQELDGKQILKNHTF 122


>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = -2

Query: 252 STGNSCSSWSSRTCP-ASATCQTRGTWKSTTSQTPQRQARKRLTRR 118
           S  N+ +  S    P  SA+ +TRG ++S++ + PQ+  R+  + R
Sbjct: 114 SKRNAANHASHHRMPDESASYRTRGEYESSSPRVPQKSLRRYYSTR 159


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
 Frame = -1

Query: 427 KRXALQVLIPKYGLEGPLYLPSXKFTY-----NEEEHVQKCGDVVLKTFDELTVRLSLDS 263
           K  A+Q ++ K    GPL +   +F Y     ++EE+ +   D  LKT  EL + LS   
Sbjct: 155 KCDAMQGVVKK---AGPLKIIHERFRYVRKSQDDEENFRHSFDEALKTIPELKMHLSKAH 211

Query: 262 SNLQHRKL--VFELVEP 218
            +L   K+  +F+ + P
Sbjct: 212 DDLNPLKVLNLFKQITP 228


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 15/43 (34%), Positives = 29/43 (67%)
 Frame = -3

Query: 134 KDSQEERDSSRRCTKTQQKEEIQKEMRREIKYKK**XKKKKKK 6
           + S+++ D + +  + ++K+E +KE ++E K KK   K+KKKK
Sbjct: 432 ESSEKDEDEAAKKEEKRRKKEAKKE-KKEKKEKKE-KKEKKKK 472


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1157

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
 Frame = -1

Query: 553  SPDTLNYRHRHAQLAG-RASVALNTH-ILFKNRVEIESAVVLAVKRXALQVLIPKYGLEG 380
            S +TL+  +R+AQ     A +    H I  ++ +    A VLAV +  + ++I ++GLE 
Sbjct: 941  SCNTLSNFYRNAQEKSLHAYLCQLLHSINLRSGLVKHKAFVLAVDQEYIDIVIYEFGLER 1000

Query: 379  PL---YLPSXKFTYNEEEH 332
             +    LP     +NE++H
Sbjct: 1001 RISLDLLPLSNCDFNEQKH 1019


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,392,013
Number of Sequences: 5004
Number of extensions: 38984
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)