Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_D09
         (823 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   0.60 
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    26   7.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    25   9.8  

>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.5 bits (63), Expect = 0.60
 Identities = 19/73 (26%), Positives = 21/73 (28%), Gaps = 1/73 (1%)
 Frame = +2

Query: 557  PTPXPXAX-PPXXXFXXXLFPXFXLXXXPXXXXPXXXXPXFXPXPXXPXXPLPXXXXXPX 733
            P P P +  PP       + P       P    P    P   P    P  P P     P 
Sbjct: 1170 PVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPV 1229

Query: 734  PXXXXPXPPXPXP 772
            P      PP P P
Sbjct: 1230 PVPTAKAPPVPAP 1242



 Score = 29.1 bits (62), Expect = 0.80
 Identities = 19/76 (25%), Positives = 19/76 (25%)
 Frame = +2

Query: 557  PTPXPXAXPPXXXFXXXLFPXFXLXXXPXXXXPXXXXPXFXPXPXXPXXPLPXXXXXPXP 736
            P P P   PP         P       P    P    P        P  P P     P P
Sbjct: 1113 PVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVP 1172

Query: 737  XXXXPXPPXPXPXXXV 784
                  PP P P   V
Sbjct: 1173 APSSGIPPVPKPAAGV 1188



 Score = 26.2 bits (55), Expect = 5.6
 Identities = 19/78 (24%), Positives = 19/78 (24%), Gaps = 1/78 (1%)
 Frame = +2

Query: 542  PXXPXPTPXPXAXPPXXXFXXXLFPX-FXLXXXPXXXXPXXXXPXFXPXPXXPXXPLPXX 718
            P    P P P    P         P        P    P    P   P    P  P P  
Sbjct: 1117 PSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSS 1176

Query: 719  XXXPXPXXXXPXPPXPXP 772
               P P      PP P P
Sbjct: 1177 GIPPVPKPAAGVPPVPPP 1194


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 321 LRSLISNLSNTCDLTPLPEWSCEQSAW 241
           +RS+   L    D+TP+ +W  ++S W
Sbjct: 109 VRSIEQELEQLRDVTPINQWKRKRSLW 135


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/25 (40%), Positives = 10/25 (40%)
 Frame = +3

Query: 492 PGTPXXXPAXXXGXXPXPXXPPPPP 566
           PG P   P       P    PPPPP
Sbjct: 6   PGNPPPPPPPPGFEPPSQPPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,271,948
Number of Sequences: 5004
Number of extensions: 14420
Number of successful extensions: 57
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)