Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_D09
         (823 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical pr...    29   3.0  
AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical ...    29   4.0  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical pr...    28   7.0  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    28   7.0  
U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog (hed...    28   9.3  

>U10438-9|AAU87834.1|  616|Caenorhabditis elegans Hypothetical
           protein B0280.13 protein.
          Length = 616

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 21/77 (27%), Positives = 22/77 (28%)
 Frame = +2

Query: 542 PXXPXPTPXPXAXPPXXXFXXXLFPXFXLXXXPXXXXPXXXXPXFXPXPXXPXXPLPXXX 721
           P    P P P A PP   F     P +     P    P    P   P P     P     
Sbjct: 436 PTRVAPPPPPSA-PPTIKFPISTGPSYSSTTPPTTPKPAPPPPSRIPNPSPSPQPAEVSK 494

Query: 722 XXPXPXXXXPXPPXPXP 772
             P P    P PP   P
Sbjct: 495 SPPPP---PPLPPIATP 508


>AF003386-9|AAB54259.1| 1621|Caenorhabditis elegans Hypothetical
            protein F59E12.9 protein.
          Length = 1621

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/37 (32%), Positives = 13/37 (35%)
 Frame = +3

Query: 492  PGTPXXXPAXXXGXXPXPXXPPPPPXQXRXPXXXXXP 602
            P  P   P       P P  PPPPP   + P     P
Sbjct: 1339 PPPPPPPPPPSDDLTPVPPPPPPPPTMSKAPTGVPLP 1375


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +3

Query: 492 PGTPXXXPAXXXGXXPXPXXPPPPPXQXRXPXXXXXP 602
           PG P   P    G       PPPPP   R P     P
Sbjct: 314 PGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPP 350


>U41017-1|AAC48211.1|  343|Caenorhabditis elegans Hypothetical
           protein T26C11.2 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 25/113 (22%), Positives = 29/113 (25%), Gaps = 2/113 (1%)
 Frame = +2

Query: 440 PXXXPXSX-RXXPXXXX*PRXXPLPXRLXXRXXXXPXXPXPTPXPXAXPPXXXFXXXL-F 613
           P   P S  +  P     P   P+P             P P P P   P        + F
Sbjct: 154 PKPMPKSKPKSEPFPNPMPFPKPMPKPKPKPKPMPKHKPKPFPKPMLFPKPMPIPKPMPF 213

Query: 614 PXFXLXXXPXXXXPXXXXPXFXPXPXXPXXPLPXXXXXPXPXXXXPXPPXPXP 772
           P       P         P   P P     P+P     P P       P P P
Sbjct: 214 PKPMPKPMPKHKPKPFPKPMLFPKPMPIPKPMPFPKPMPKPKPKPKPMPKPKP 266


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 13/37 (35%), Positives = 13/37 (35%)
 Frame = +3

Query: 492 PGTPXXXPAXXXGXXPXPXXPPPPPXQXRXPXXXXXP 602
           PG P   P    G       PPPPP   R P     P
Sbjct: 324 PGMPPPPPPSRFGPPGMGGMPPPPPPGMRYPGGMPPP 360


>U41543-12|AAZ91345.1|  401|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 7 protein.
          Length = 401

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 21/76 (27%), Positives = 23/76 (30%), Gaps = 2/76 (2%)
 Frame = +2

Query: 551 PXPTPXPXAXPPXXXFXXXLFPXFXLXXXPXXXXPXXXXPXFX-PXPXXPXXPLP-XXXX 724
           P P P P    P        +P   +   P    P    P    P P  P  P P     
Sbjct: 67  PPPAPYPQHAVPAPAPPLASYPQNAV---PVPAPPPAPYPQHAVPAPAPPPAPYPQHAVP 123

Query: 725 XPXPXXXXPXPPXPXP 772
            P P    P PP P P
Sbjct: 124 APAPYQQQPPPPPPPP 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,904,624
Number of Sequences: 27780
Number of extensions: 124606
Number of successful extensions: 1017
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)