Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_D08
         (781 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0584 - 4178391-4178732,4178854-4178915,4180361-4180481,418...    46   4e-05
11_01_0320 - 2406706-2406943,2407297-2407385,2407463-2408335,240...    31   0.78 
02_04_0581 - 24068122-24068355,24068693-24068906,24069675-240697...    30   1.8  
12_01_0328 + 2535049-2535213,2536611-2537777                           30   2.4  
09_02_0368 - 7984894-7984905,7985250-7985301,7985947-7985969,798...    28   7.2  
04_03_0853 - 20292734-20292968,20293056-20293144,20293239-202941...    28   9.6  
02_01_0573 + 4234866-4235081                                           28   9.6  

>06_01_0584 - 4178391-4178732,4178854-4178915,4180361-4180481,
            4180592-4180732,4180830-4180959,4182306-4182436,
            4182528-4182601,4182680-4182741,4183135-4183209,
            4184658-4184760,4184835-4184991,4185549-4185743,
            4186204-4186282,4186697-4186806,4187249-4187374,
            4187475-4187541,4187622-4187791,4187880-4188018,
            4188361-4188522,4188672-4188772,4188852-4188994,
            4189438-4189537,4190364-4190414,4191062-4191169,
            4191279-4191494,4191585-4191721,4191820-4191915,
            4192017-4192234,4192764-4192925,4193006-4193163,
            4194221-4194379
          Length = 1364

 Score = 45.6 bits (103), Expect = 4e-05
 Identities = 33/98 (33%), Positives = 44/98 (44%)
 Frame = -1

Query: 703  VXGFNARQRKSFLNAIMRYGCXXXXXXXXSG**EICAGSLSATFKAYVSLFMRHLCEPGA 524
            V GFN  QR  FL  +MRYG         +       G      + Y  L M HL E   
Sbjct: 969  VYGFNQIQRTQFLQTLMRYGFQNYDWKEFT---PRLKGKSVEEIQRYAELVMIHLLEDIN 1025

Query: 523  DNAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFE 410
            D+   +ADGVP+E +     L R+  +SL+ +KV   E
Sbjct: 1026 DSG-YYADGVPKE-MRTDETLVRLANISLVEEKVAAME 1061


>11_01_0320 -
           2406706-2406943,2407297-2407385,2407463-2408335,
           2408882-2409310
          Length = 542

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -3

Query: 614 WLVRDLRGKSERNFQGLRVLVHAPSLRTGRRQRG-NICGRRSEGRIIPSARFD 459
           WL RDL G   R    L  LVHAP   T    +G     RR+   ++  AR D
Sbjct: 369 WLERDLAGVDRRRTPWLLALVHAPWYNTNEAHQGEGERMRRAMESLLYEARVD 421


>02_04_0581 -
           24068122-24068355,24068693-24068906,24069675-24069755,
           24069853-24070024,24070806-24070884,24071384-24071477,
           24072065-24072147,24072284-24072401,24072457-24072461
          Length = 359

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -1

Query: 589 SLSATFKAYVSLFMRHLCEPGADNAETFADGVPREGL 479
           ++ ATFK   S F+ H C+P     +   DG  R G+
Sbjct: 158 TIDATFKGNTSRFLNHSCDPNCKLEKWQVDGETRVGV 194


>12_01_0328 + 2535049-2535213,2536611-2537777
          Length = 443

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 23/82 (28%), Positives = 33/82 (40%)
 Frame = -3

Query: 617 QWLVRDLRGKSERNFQGLRVLVHAPSLRTGRRQRGNICGRRSEGRIIPSARFDTNRGNEF 438
           +WL RDL G        +  LVHAP   + R  RG       EG  + +A  +   G   
Sbjct: 280 RWLRRDLAGVDRAKTAFVVALVHAPWYNSNRAHRG-------EGDAMRAAMEELLYGARV 332

Query: 437 DQEKGSGIRTHQRVLQHAGTGE 372
           D      +  ++R  +  G GE
Sbjct: 333 DAVFAGHVHAYERFARVYGGGE 354


>09_02_0368 -
           7984894-7984905,7985250-7985301,7985947-7985969,
           7987006-7987071,7987155-7987206,7987617-7987820,
           7987937-7988017,7988103-7988236
          Length = 207

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 586 LSATFKAYVSLFMRHLCEPGADNAETFADGVPREGL 479
           + AT K  +S F+ H CEP  +  +   +G  R G+
Sbjct: 20  IDATNKGNMSRFINHSCEPNTEMQKWTVEGETRVGI 55


>04_03_0853 -
           20292734-20292968,20293056-20293144,20293239-20294111,
           20294203-20294364
          Length = 452

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 22/72 (30%), Positives = 30/72 (41%), Gaps = 6/72 (8%)
 Frame = -3

Query: 656 HAVRMPPQDAFNS-----QWLVRDLRGKSERNFQGLRVLVHAPSLRTGRRQRG-NICGRR 495
           H V +     FNS     +WL RDL          + VL+HAP   T     G     R+
Sbjct: 261 HVVMLGSYADFNSSSEQYRWLARDLAAVDRGATPWVVVLLHAPWYNTNAAHEGEGEAMRK 320

Query: 494 SEGRIIPSARFD 459
           +  R++  AR D
Sbjct: 321 AMERLLYEARVD 332


>02_01_0573 + 4234866-4235081
          Length = 71

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 9/24 (37%), Positives = 18/24 (75%)
 Frame = -3

Query: 629 AFNSQWLVRDLRGKSERNFQGLRV 558
           A+ SQW+  D++G++ R  +G+R+
Sbjct: 2   AYKSQWMDVDVQGRARRPCEGMRI 25


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,577,909
Number of Sequences: 37544
Number of extensions: 297833
Number of successful extensions: 769
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2091906552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)