Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_D06
         (863 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39999-1|AAK93855.1|  277|Caenorhabditis elegans Hypothetical pr...    32   0.61 
AL132949-37|CAB70100.3|  285|Caenorhabditis elegans Hypothetical...    28   9.9  
AL132949-4|CAB70101.2|  439|Caenorhabditis elegans Hypothetical ...    28   9.9  

>U39999-1|AAK93855.1|  277|Caenorhabditis elegans Hypothetical
           protein F41G3.14 protein.
          Length = 277

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 24/56 (42%), Positives = 30/56 (53%)
 Frame = -1

Query: 494 LPY*WLVVAIVILLSTRGTAVSDILVHALGRAAGGAKLPSAGLCLNASKAEASLAE 327
           LP  W +  IV +LS  G  + D  V ALG A   AKLPS  + LN S+ + S  E
Sbjct: 122 LPLEWQLHIIVKVLSLEGNFL-DAAVCALGAALVDAKLPS--IVLNHSEGDESTIE 174


>AL132949-37|CAB70100.3|  285|Caenorhabditis elegans Hypothetical
           protein Y53F4B.4a protein.
          Length = 285

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 455 AVLLSQRQAISRVKLTCLTTGLXPAHVSLLMGEQSKAW 568
           A LL+ R   S+V  TC   G+  +H + +M  Q K W
Sbjct: 73  AFLLNPRPG-SQVFDTCAAPGMKTSHAAAIMENQGKVW 109


>AL132949-4|CAB70101.2|  439|Caenorhabditis elegans Hypothetical
           protein Y53F4B.4b protein.
          Length = 439

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 455 AVLLSQRQAISRVKLTCLTTGLXPAHVSLLMGEQSKAW 568
           A LL+ R   S+V  TC   G+  +H + +M  Q K W
Sbjct: 227 AFLLNPRPG-SQVFDTCAAPGMKTSHAAAIMENQGKVW 263


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,676,633
Number of Sequences: 27780
Number of extensions: 330708
Number of successful extensions: 888
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)