Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_D04
         (860 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1136 + 24218601-24218734,24218769-24219906                       32   0.51 
03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776     29   3.6  
02_05_0686 - 30900748-30902167,30903442-30904742                       29   6.3  
01_01_0083 + 631196-631675                                             29   6.3  

>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 32.3 bits (70), Expect = 0.51
 Identities = 21/65 (32%), Positives = 23/65 (35%)
 Frame = +1

Query: 628 PPXPXGGGGXXKKKKXFFXXXXKXXXRGGXXPSPPXXGGGXX*XXPPXGGXXFXFLXRXA 807
           PP P GGGG    ++            GG    PP  G G     PP GG       R  
Sbjct: 132 PPAPGGGGGGGAPRRVLGGGGG-----GGALARPPGGGRGGALGRPPGGGGGGGGPGRAP 186

Query: 808 XGAGG 822
            G GG
Sbjct: 187 GGGGG 191



 Score = 29.9 bits (64), Expect = 2.7
 Identities = 23/81 (28%), Positives = 24/81 (29%)
 Frame = +1

Query: 580 PPXXXKTPPFXXXKKXPPXPXGGGGXXKKKKXFFXXXXKXXXRGGXXPSPPXXGGGXX*X 759
           P    +T P     K    P GGGG                  GG    PP  GGG    
Sbjct: 72  PDPEARTTPRPLPIKLLGLPPGGGGAPGPLGGGGARPPGGGGGGGPPSLPPGAGGGGGAR 131

Query: 760 XPPXGGXXFXFLXRXAXGAGG 822
            P  GG       R   G GG
Sbjct: 132 PPAPGGGGGGGAPRRVLGGGG 152


>03_03_0160 + 14957139-14957603,14958054-14958113,14959012-14959776
          Length = 429

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 17/45 (37%), Positives = 17/45 (37%)
 Frame = -1

Query: 776 PPXGGXFXXXPPPXXGGEGXXPPRXXXFXXXXKXFFFFFXXPPPP 642
           P   G F   PPP   G G  PPR           F F   PPPP
Sbjct: 227 PGHPGAFYPFPPPSLPGVG--PPRGGGAIPGLPAGFPFLLRPPPP 269


>02_05_0686 - 30900748-30902167,30903442-30904742
          Length = 906

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 13/38 (34%), Positives = 14/38 (36%)
 Frame = -1

Query: 821 PPAPXAXRXRXKNXXPPXGGXFXXXPPPXXGGEGXXPP 708
           PP P   +       PP GG     PPP   G    PP
Sbjct: 353 PPPPPPPKGPSPPPPPPPGGKKGGPPPPPPKGGASRPP 390


>01_01_0083 + 631196-631675
          Length = 159

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 14/45 (31%), Positives = 16/45 (35%)
 Frame = -1

Query: 776 PPXGGXFXXXPPPXXGGEGXXPPRXXXFXXXXKXFFFFFXXPPPP 642
           PP    +   PPP  GG G  P              F +  PPPP
Sbjct: 68  PPSSSSYWNYPPPQGGGGGYIPYYQPPAGGGGGGGGFNYPAPPPP 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,822,824
Number of Sequences: 37544
Number of extensions: 431455
Number of successful extensions: 1086
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)