Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_D04
         (860 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23172-13|ABH03527.1|  282|Caenorhabditis elegans Hypothetical p...    30   2.4  
U23172-12|ABH03526.1|  562|Caenorhabditis elegans Hypothetical p...    30   2.4  
AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    30   2.4  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    30   2.4  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    30   2.4  
AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical ...    29   3.2  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   4.3  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   4.3  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   4.3  
AC006834-6|AAF40004.1|  233|Caenorhabditis elegans Hypothetical ...    28   7.4  

>U23172-13|ABH03527.1|  282|Caenorhabditis elegans Hypothetical
           protein F25B5.7c protein.
          Length = 282

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 24/76 (31%), Positives = 26/76 (34%), Gaps = 1/76 (1%)
 Frame = -1

Query: 773 PXGGXFXXXPPPXXGGEGXXPPRXXXFXXXXKXFFFFFXXPPPPXGXGGXFXXXKKG-GV 597
           P GG     P    GG G  PP    F    +  F     PPP  G GG       G G 
Sbjct: 118 PHGGSMFGGP----GGPGGPPPFGQPFQQAPQGMFNVPTGPPPLMGGGGDPRGPPGGMGG 173

Query: 596 LXXXGGXFXPPTKXGK 549
               GG   PP   G+
Sbjct: 174 PPGHGGMGGPPGHGGQ 189


>U23172-12|ABH03526.1|  562|Caenorhabditis elegans Hypothetical
           protein F25B5.7a protein.
          Length = 562

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 24/76 (31%), Positives = 26/76 (34%), Gaps = 1/76 (1%)
 Frame = -1

Query: 773 PXGGXFXXXPPPXXGGEGXXPPRXXXFXXXXKXFFFFFXXPPPPXGXGGXFXXXKKG-GV 597
           P GG     P    GG G  PP    F    +  F     PPP  G GG       G G 
Sbjct: 398 PHGGSMFGGP----GGPGGPPPFGQPFQQAPQGMFNVPTGPPPLMGGGGDPRGPPGGMGG 453

Query: 596 LXXXGGXFXPPTKXGK 549
               GG   PP   G+
Sbjct: 454 PPGHGGMGGPPGHGGQ 469


>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/66 (27%), Positives = 20/66 (30%)
 Frame = +3

Query: 579 PPXXX*NPPLFXXXKXPPPPXXGGGXXKKKKKXFXXXXEXXXXGGXXXLPPXXRGGXXXK 758
           PP    +PPL      PPPP  G     +                    PP  R G    
Sbjct: 240 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 299

Query: 759 XPPXRG 776
            PP RG
Sbjct: 300 PPPPRG 305


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/66 (27%), Positives = 20/66 (30%)
 Frame = +3

Query: 579 PPXXX*NPPLFXXXKXPPPPXXGGGXXKKKKKXFXXXXEXXXXGGXXXLPPXXRGGXXXK 758
           PP    +PPL      PPPP  G     +                    PP  R G    
Sbjct: 261 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 320

Query: 759 XPPXRG 776
            PP RG
Sbjct: 321 PPPPRG 326


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 18/66 (27%), Positives = 20/66 (30%)
 Frame = +3

Query: 579 PPXXX*NPPLFXXXKXPPPPXXGGGXXKKKKKXFXXXXEXXXXGGXXXLPPXXRGGXXXK 758
           PP    +PPL      PPPP  G     +                    PP  R G    
Sbjct: 246 PPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPPP 305

Query: 759 XPPXRG 776
            PP RG
Sbjct: 306 PPPPRG 311


>AL032652-4|CAB63398.1|  486|Caenorhabditis elegans Hypothetical
           protein Y63D3A.5 protein.
          Length = 486

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/34 (38%), Positives = 13/34 (38%)
 Frame = -3

Query: 807 GGAXEKXKXXPPXXGXXLXXPPPXXGGGGXXPPP 706
           GG        PP  G     PPP  G G   PPP
Sbjct: 415 GGPGAPGSYGPPQGGPGGFGPPPPGGPGAYGPPP 448


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +1

Query: 553 PXFVGGXXXPPXXXKTPPFXXXKKXPPXPXGG 648
           P   GG   PP     PP       PP P GG
Sbjct: 736 PPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 767



 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
 Frame = -3

Query: 777 PPXXGXXLXXPPPXXGG--GGXXPPP 706
           PP  G     PPP  GG  GG  PPP
Sbjct: 763 PPPGGCPPPPPPPPPGGFKGGPPPPP 788


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +1

Query: 553 PXFVGGXXXPPXXXKTPPFXXXKKXPPXPXGG 648
           P   GG   PP     PP       PP P GG
Sbjct: 736 PPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 767



 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
 Frame = -3

Query: 777 PPXXGXXLXXPPPXXGG--GGXXPPP 706
           PP  G     PPP  GG  GG  PPP
Sbjct: 763 PPPGGCPPPPPPPPPGGFKGGPPPPP 788


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +1

Query: 553 PXFVGGXXXPPXXXKTPPFXXXKKXPPXPXGG 648
           P   GG   PP     PP       PP P GG
Sbjct: 319 PPITGGPPPPPPPGGLPPISGGPPPPPPPPGG 350



 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/26 (50%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
 Frame = -3

Query: 777 PPXXGXXLXXPPPXXGG--GGXXPPP 706
           PP  G     PPP  GG  GG  PPP
Sbjct: 346 PPPGGCPPPPPPPPPGGFKGGPPPPP 371


>AC006834-6|AAF40004.1|  233|Caenorhabditis elegans Hypothetical
           protein ZK973.9 protein.
          Length = 233

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 16/39 (41%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
 Frame = -1

Query: 818 PAPXAXRXRXKNXXPPXG--GXFXXXPPPXXGGEGXXPP 708
           PAP     R     PP G  G     PPP  G EG  PP
Sbjct: 187 PAPQMSGQRMPYPYPPQGMPGYPGGPPPPPHGYEGYPPP 225


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,225,047
Number of Sequences: 27780
Number of extensions: 254533
Number of successful extensions: 846
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)