Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_D03
         (779 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    81   2e-16
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb...    29   0.75 
SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    29   0.99 
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub...    29   0.99 
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces...    27   4.0  
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch...    27   4.0  
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   9.2  

>SPAC2F3.16 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 425

 Score = 80.6 bits (190), Expect = 2e-16
 Identities = 33/87 (37%), Positives = 50/87 (57%)
 Frame = -1

Query: 587 CGHLXHRPXXEQXXHSGXYACPTCQTSMIDMSNLWNYLDSEVAATPMPSEYADYKATILC 408
           C H  H+   E+   +  Y CPTC  ++I++++L+  LD E+   PMP  Y  + +TI C
Sbjct: 290 CSHPLHQRCHEEYIRTN-YRCPTCYKTIINVNSLFRILDMEIERQPMPYPYNTWISTIRC 348

Query: 407 KDCHKLSTVKFHVVGLKCQHCGAYNTC 327
            DC+     K+H +G KC  C +YNTC
Sbjct: 349 NDCNSRCDTKYHFLGHKCNSCHSYNTC 375


>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 587 CGHLXHRPXXEQXXHSGXYACPTCQTSM 504
           C H  HRP   +      +ACPTC T +
Sbjct: 339 CKHEFHRPCIAKWIVDYRHACPTCNTEV 366


>SPBP4H10.07 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 583

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -1

Query: 587 CGHLXHRPXXEQXXHSGXYACPTCQT 510
           C H  HR   +Q   S   +CP C+T
Sbjct: 544 CNHFFHRECIDQWLTSSQNSCPLCRT 569


>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
           subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 838

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -1

Query: 527 CPTCQTSMIDMSNLWNYLDSEVAATPMPSEY 435
           C  C  +   M  LW++LDSE    P+ + Y
Sbjct: 106 CEACVENKTLMVKLWSFLDSEGPLNPLQASY 136


>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 879

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +2

Query: 335 CRLRNVDISVLRRETSPLTA 394
           C LRN D+   +R TSPLTA
Sbjct: 613 CGLRNDDLQGNQRRTSPLTA 632


>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
           Psm3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1194

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 390 VNGEVSRRRTEMSTLRSLQHVSDERV 313
           +N E+S +R E+ +L  LQH    R+
Sbjct: 878 INSEISDKRNELESLEELQHEVATRI 903


>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -1

Query: 587 CGHLXHRPXXEQXXHSGXYACPTCQ 513
           C H  H+   +Q   +G  +CP C+
Sbjct: 785 CKHFFHQACIDQWLTTGNNSCPLCR 809


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,016,485
Number of Sequences: 5004
Number of extensions: 32873
Number of successful extensions: 115
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)