Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_D03
         (779 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein ...    26   0.45 
AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein ...    26   0.45 
L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein pro...    23   4.2  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            22   7.4  

>DQ855485-1|ABH88172.1|  128|Apis mellifera chemosensory protein 4
           protein.
          Length = 128

 Score = 25.8 bits (54), Expect = 0.45
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = +2

Query: 347 NVDISVLRRETSPLTAYDNPCTVSWPCSRRTRTASVWPLLRNRDNSRDSTCRSCS 511
           NVDI V+      L AY N      PC     T     L RN  ++ ++ C  CS
Sbjct: 30  NVDIDVVLNTERLLNAYVNCLLDQGPC-----TPDAAELKRNLPDALENECSPCS 79


>AJ973400-1|CAJ01447.1|  128|Apis mellifera hypothetical protein
           protein.
          Length = 128

 Score = 25.8 bits (54), Expect = 0.45
 Identities = 18/55 (32%), Positives = 23/55 (41%)
 Frame = +2

Query: 347 NVDISVLRRETSPLTAYDNPCTVSWPCSRRTRTASVWPLLRNRDNSRDSTCRSCS 511
           NVDI V+      L AY N      PC     T     L RN  ++ ++ C  CS
Sbjct: 30  NVDIDVVLNTERLLNAYVNCLLDQGPC-----TPDAAELKRNLPDALENECSPCS 79


>L01589-1|AAA27736.1|   81|Apis mellifera zinc finger protein
           protein.
          Length = 81

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
 Frame = -1

Query: 623 IHTSRIPCHIPXCGHLXHRPXXEQ---XXHSG--XYACPTC 516
           I T  +PC    CG    RP   Q     H+G   ++C  C
Sbjct: 36  IRTHTLPCKCHLCGKAFSRPWLLQGHIRTHTGEKPFSCQHC 76


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +2

Query: 395 YDNPCTVSWPCSRRTRTASVWPLLRNRD 478
           +DN C+  W C  R R   ++ ++R R+
Sbjct: 370 HDNICSNGWICEHRWR--QIYNMVRFRN 395


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,545
Number of Sequences: 438
Number of extensions: 2442
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24518154
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)