Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_D02
         (881 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0933 + 20906482-20906660,20907770-20907832,20910028-209101...    31   1.6  
02_01_0138 + 999809-999821,1000456-1001341,1001424-1003221,10037...    29   3.7  
07_01_0004 + 35300-35533,35617-35732,39044-39287,39451-40578,406...    29   4.9  
06_03_0108 - 16732215-16732572,16732623-16732741,16733344-167333...    29   4.9  
03_05_0958 - 29200048-29200731                                         29   4.9  
02_05_0040 + 25341418-25341810                                         29   4.9  
12_02_0954 - 24757417-24758214                                         29   6.5  
07_03_0658 - 20366559-20367562,20367745-20367937                       29   6.5  
06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137           29   6.5  

>04_03_0933 +
           20906482-20906660,20907770-20907832,20910028-20910144,
           20910433-20910688,20910788-20910946,20911052-20911203,
           20911310-20911454
          Length = 356

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +3

Query: 759 GGVVTTFWKVPLILVPKQTPLTSMGWXLGNPVSKPLST 872
           G ++ TF+K P I+V  Q P         NP S P+ST
Sbjct: 144 GAMLLTFYKGPKIMVLDQLPHPKFAHLTENPQSHPIST 181


>02_01_0138 +
           999809-999821,1000456-1001341,1001424-1003221,
           1003716-1003805,1004034-1004111,1004513-1004518,
           1004849-1004958,1005174-1005369
          Length = 1058

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
 Frame = +2

Query: 620 AGSVPVSSMEV-KTAWMASPGDLTVH*TSSAYIDLP-PYTPYRPFASMGR-SCYDILE 784
           A  V VS+ +V +  W++S  +LT++  SS  + LP P +P   ++S+ R S +  +E
Sbjct: 351 ASPVQVSTSQVDQNEWISSLRELTIYDCSSLVVSLPIPPSPLMSYSSIKRLSAFPTME 408


>07_01_0004 +
           35300-35533,35617-35732,39044-39287,39451-40578,
           40657-40833
          Length = 632

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -2

Query: 535 YRTSLYKKAGWYRSGIPRALCDIHCAGADSLSLISWW 425
           Y+TSL  + G ++ G+PR  C    AG D L     W
Sbjct: 285 YQTSLSPRCGAFKDGVPRMSC-AKIAGRDKLKRRGDW 320


>06_03_0108 -
           16732215-16732572,16732623-16732741,16733344-16733393,
           16734619-16734820
          Length = 242

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +1

Query: 604 RLESGGWIGPGVFYGGQNSVDGVSRRSDGS 693
           R  SGG  GP V YGG+    GV R+ D S
Sbjct: 140 RRGSGG-TGPAVDYGGRGDSGGVRRKEDSS 168


>03_05_0958 - 29200048-29200731
          Length = 227

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +1

Query: 580 KLLSVPRPRLESGGWIGPGVFYGGQNSVDGVSRRSDG 690
           +L+   R R +SGG  G G    G +S DG S+ SDG
Sbjct: 150 RLIEYVRSRNKSGGGGGGGGVAAGCSSSDGDSKSSDG 186


>02_05_0040 + 25341418-25341810
          Length = 130

 Score = 29.1 bits (62), Expect = 4.9
 Identities = 15/33 (45%), Positives = 17/33 (51%)
 Frame = +2

Query: 113 RRAAPA*SCGHSRSEMSASRRRLSAPNAYDSPP 211
           RRAAP   CG S+   S  +RR  AP    S P
Sbjct: 74  RRAAPRRRCGGSKRRCSGPQRRRGAPRRRCSGP 106


>12_02_0954 - 24757417-24758214
          Length = 265

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = +3

Query: 57  TLERPRPAARAHGAIVLAVGEQRLPEAAG---IPDQK*APVVVGSRH 188
           T +RPRP+  A  A+  A+       A+G      Q+ AP VV S+H
Sbjct: 100 TRKRPRPSRPARAAVAAAIAAAAAASASGSQIAAQQQQAPPVVMSQH 146


>07_03_0658 - 20366559-20367562,20367745-20367937
          Length = 398

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 16/56 (28%), Positives = 23/56 (41%)
 Frame = +3

Query: 168 VVVGSRHRMRMILRQHGFGQCVEQRPLVPEVPVKRRLLNPQPFRQFACRQTVYADL 335
           V+ G+ H + M L +HG    V  + L+P        L    FRQ       + DL
Sbjct: 251 VIPGTEHALNMRLTEHGLDGHVSIKDLIPLAAANADELLSDAFRQLGLAGVEWNDL 306


>06_01_0464 - 3300356-3300673,3300757-3301244,3301315-3302137
          Length = 542

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -2

Query: 598 AGRITISHRKQL*P-LGLFR*HYRTSLYKKAGWY 500
           AG + +SH   + P L +FR  ++  L+K  GWY
Sbjct: 130 AGFLVLSHHAGVPPSLAVFRHFFKLCLFKSNGWY 163


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,843,402
Number of Sequences: 37544
Number of extensions: 576267
Number of successful extensions: 1415
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1360
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1414
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)