Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_D02
         (881 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83239-4|CAB05808.1|  336|Caenorhabditis elegans Hypothetical pr...    29   5.8  
AC006792-1|AAF60741.2|  642|Caenorhabditis elegans Hypothetical ...    29   5.8  
Z81128-4|CAB03403.1|  898|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>Z83239-4|CAB05808.1|  336|Caenorhabditis elegans Hypothetical
           protein T09F5.8 protein.
          Length = 336

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
 Frame = +2

Query: 683 LTVH*TSSAYIDLPPYTPYRPFASM---GRSCYDILESPVDFGAKTNSIDVNGV 835
           ++VH  S+  I L  + PY  F +     R C++ L+  V+F   T S DV+ +
Sbjct: 281 MSVHGASATLIMLYCHAPYHDFCAKLFCNRLCFNKLKVEVNFVETTGSADVHRI 334


>AC006792-1|AAF60741.2|  642|Caenorhabditis elegans Hypothetical
           protein Y50C1A.1 protein.
          Length = 642

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/63 (26%), Positives = 25/63 (39%)
 Frame = +2

Query: 311 SSDRLRRPRSTGPEXARITVFGCNFVMLDTLSLINIICPPTYQ**RIRASTMDITQCSRN 490
           S  R R  RS       +T  GC+        + NI+C   +   ++   T +  Q   N
Sbjct: 518 SDSRKRISRSFSASSLMLTCIGCDSEFKPASQVTNIMCDQCFAWQKMSVLTSNCDQFMGN 577

Query: 491 SGP 499
           SGP
Sbjct: 578 SGP 580


>Z81128-4|CAB03403.1|  898|Caenorhabditis elegans Hypothetical
           protein T23D8.4 protein.
          Length = 898

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 601 PRLESGGWIGPGVFYGGQNSVDGVSRRSDG 690
           PR   GG+ GPG ++ G+N   G  ++  G
Sbjct: 833 PRTGRGGYQGPGSWFPGRNERQGDKQKGSG 862


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,483,714
Number of Sequences: 27780
Number of extensions: 432968
Number of successful extensions: 1028
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 972
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1028
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)