Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_D01
         (768 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster...    28   1.7  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       26   6.8  
SPAC24C9.16c |cox8||cytochrome c oxidase subunit VIII|Schizosacc...    26   6.8  
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch...    25   9.0  

>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/42 (30%), Positives = 17/42 (40%)
 Frame = -1

Query: 372 PPXPGNSGXREXVSLLGAPENSGRXLNNGTLXSRVSHSKRXT 247
           PP P  +G      + G    SG  LNN  L  R +  +  T
Sbjct: 3   PPSPPKTGSNNSAPVTGKTVQSGNALNNSGLVKRQARKRTKT 44


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = +1

Query: 22  SSDESPGAGLSLNRSQHDAALPEHNTPARNGSRLQTIPSPEHRTELYPDLRSRD 183
           S    PG   S  RS+  +   EHN+   N   LQ +   E + +   D + R+
Sbjct: 202 SRSRRPGRSRSRRRSRRPSPSAEHNSAEENDPELQRV-IEESKRQAEEDAKRRN 254


>SPAC24C9.16c |cox8||cytochrome c oxidase subunit
           VIII|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 66

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +2

Query: 92  TTPRPGTEVVYRLFRAPNIELSYIRTFGAVMHV 190
           + P+PG+ + + + + P   L Y  TFG +  +
Sbjct: 22  SAPKPGSTIPFYINKKPLPTLLYFGTFGVIFSI 54


>SPBC1271.15c |||translation initiation factor
           IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 686

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = -1

Query: 309 SGRXLNNGTLXSRVSHSKRXTRRRSPIWIAEIDAI 205
           +G  + NGT+    SH  R  R    IW  EID++
Sbjct: 610 AGCRVTNGTIEK--SHKIRLVRNDKIIWSGEIDSL 642


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,078,519
Number of Sequences: 5004
Number of extensions: 33011
Number of successful extensions: 68
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)