Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_D01
         (768 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1259 + 25255775-25255780,25255880-25255967,25256142-252567...    31   1.0  
01_07_0274 + 42428947-42429108,42429405-42430178                       29   5.4  
03_01_0009 - 89127-89924,90090-90518,90582-90716,91102-91382,916...    28   9.4  
02_04_0013 - 18910009-18910056,18910154-18910282,18910373-189104...    28   9.4  

>07_03_1259 +
           25255775-25255780,25255880-25255967,25256142-25256728,
           25257172-25257362,25257531-25257594,25257949-25257984
          Length = 323

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +3

Query: 42  RRAESQQIAARRCSTXAQHPGQERKSSTDYS 134
           RRA+S +  +RR ST A+H   ER SS+  S
Sbjct: 103 RRAKSTKSGSRRGSTAAEHDADERSSSSSSS 133


>01_07_0274 + 42428947-42429108,42429405-42430178
          Length = 311

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 21/60 (35%), Positives = 27/60 (45%)
 Frame = -2

Query: 227 GSRRSMLSVFFLTRASRLRRSGYNSVRCSGLGIVCRRLPFLAGVLCSGRAASCCDLLRLS 48
           G   S+L     T AS L      ++R S L  V + L  L    CSG   SC D+L L+
Sbjct: 55  GCDASVLLARTATEASELDAPPNETIRPSALMAVAQ-LRALLDDACSGAVVSCADILTLA 113


>03_01_0009 -
           89127-89924,90090-90518,90582-90716,91102-91382,
           91634-91809,91899-92011,92157-92278,92375-92594
          Length = 757

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = +1

Query: 22  SSDESPGAGLSLNRSQHDAALPEHNTPARNGSRLQTIPSPEHRTELYPDLRSRDARVKKK 201
           SSD+SP     L  S   +  P++++PA     L         T +YPD   +D RV   
Sbjct: 216 SSDQSPFDSPRLLGSNLPSENPKNSSPAHRNRSLTLYDYLNGSTSIYPD---KDRRVNSS 272

Query: 202 T 204
           T
Sbjct: 273 T 273


>02_04_0013 -
           18910009-18910056,18910154-18910282,18910373-18910420,
           18910532-18910594,18910675-18910713,18912107-18912180,
           18913014-18913072,18913265-18913324,18913466-18913590,
           18914054-18914112,18914356-18914419,18914516-18914569,
           18914727-18914765,18916135-18916275
          Length = 333

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 61  RSQHDAALPEHNTPARN-GSRLQTIPSPEHRTELYPDLRS 177
           R +  AA  E +   R  G R++  P PE   E +PD R+
Sbjct: 7   RKRAAAAAEEEDAATRGRGKRVKASPKPETEAEYFPDKRN 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,765,913
Number of Sequences: 37544
Number of extensions: 308371
Number of successful extensions: 611
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)