Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_D01
(768 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025722-2|AAK68508.1| 605|Caenorhabditis elegans Hypothetical ... 32 0.52
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 31 1.2
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 31 1.2
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 31 1.2
Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical pr... 29 2.8
Z99269-1|CAB16467.1| 1461|Caenorhabditis elegans Hypothetical pr... 29 4.8
U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical pr... 28 6.4
U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical pr... 28 6.4
U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical pr... 28 6.4
>AC025722-2|AAK68508.1| 605|Caenorhabditis elegans Hypothetical
protein Y50D4C.3 protein.
Length = 605
Score = 31.9 bits (69), Expect = 0.52
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Frame = +1
Query: 28 DESPGAGLSLNRSQHDAALPEHNTPA--RNGSRLQTIPSPEHRTELYPDLRSRDARVKKK 201
D+ P A NR ++A P++ PA R+G+R P P++R Y R RD + +
Sbjct: 350 DQRPAAARDDNRGPKNSA-PQNQRPAAARDGNRGPKNPGPQNRAADY--FRDRDRQQRPS 406
Query: 202 TDSI 213
T S+
Sbjct: 407 TGSV 410
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/70 (31%), Positives = 23/70 (32%)
Frame = -3
Query: 577 PPPXGGFFXXXXXXKTPPXXXGXPPLFXXFXX*KXXGPKXPRXGXKXSPXPXGXXMPXXT 398
PPP GG PP G PP+ P P G P P P
Sbjct: 729 PPPPGGLPPITGGPPPPPPPGGLPPISGG-----PPPPPPPPGGCPPPPPP-----PPPG 778
Query: 397 PFKGXXXPPP 368
FKG PPP
Sbjct: 779 GFKGGPPPPP 788
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/70 (31%), Positives = 23/70 (32%)
Frame = -3
Query: 577 PPPXGGFFXXXXXXKTPPXXXGXPPLFXXFXX*KXXGPKXPRXGXKXSPXPXGXXMPXXT 398
PPP GG PP G PP+ P P G P P P
Sbjct: 729 PPPPGGLPPITGGPPPPPPPGGLPPISGG-----PPPPPPPPGGCPPPPPP-----PPPG 778
Query: 397 PFKGXXXPPP 368
FKG PPP
Sbjct: 779 GFKGGPPPPP 788
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 30.7 bits (66), Expect = 1.2
Identities = 22/70 (31%), Positives = 23/70 (32%)
Frame = -3
Query: 577 PPPXGGFFXXXXXXKTPPXXXGXPPLFXXFXX*KXXGPKXPRXGXKXSPXPXGXXMPXXT 398
PPP GG PP G PP+ P P G P P P
Sbjct: 312 PPPPGGLPPITGGPPPPPPPGGLPPISGG-----PPPPPPPPGGCPPPPPP-----PPPG 361
Query: 397 PFKGXXXPPP 368
FKG PPP
Sbjct: 362 GFKGGPPPPP 371
>Z46791-4|CAA86758.1| 317|Caenorhabditis elegans Hypothetical
protein C09G5.5 protein.
Length = 317
Score = 29.5 bits (63), Expect = 2.8
Identities = 18/50 (36%), Positives = 20/50 (40%)
Frame = -1
Query: 435 PXXPXGNXCPXXXLLKGXXXPPPXPGNSGXREXVSLLGAPENSGRXLNNG 286
P P GN P G PP PG +G GAP N GR +G
Sbjct: 150 PQGPNGN--PGAPAHGGGQGPPGPPGPAGDAGSPGQAGAPGNPGRPGQSG 197
>Z99269-1|CAB16467.1| 1461|Caenorhabditis elegans Hypothetical
protein W10C6.1 protein.
Length = 1461
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/41 (43%), Positives = 19/41 (46%)
Frame = +1
Query: 85 PEHNTPARNGSRLQTIPSPEHRTELYPDLRSRDARVKKKTD 207
P +TPA SRLQT SP HRT L R D D
Sbjct: 7 PGTSTPAAQ-SRLQTTASPFHRTHLTQMCRRGDTNASLLRD 46
>U51998-7|AAA96080.2| 769|Caenorhabditis elegans Hypothetical
protein C12D12.1a protein.
Length = 769
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 107 LAGVLCSGRAASCCDLLRLSPAPGDSSE 24
+AGV C+G A+ CD + P P SS+
Sbjct: 226 VAGVTCAGADANSCDHVAYMPHPPPSSD 253
>U51998-6|ABS83845.1| 825|Caenorhabditis elegans Hypothetical
protein C12D12.1c protein.
Length = 825
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 107 LAGVLCSGRAASCCDLLRLSPAPGDSSE 24
+AGV C+G A+ CD + P P SS+
Sbjct: 226 VAGVTCAGADANSCDHVAYMPHPPPSSD 253
>U51998-5|AAL00856.2| 648|Caenorhabditis elegans Hypothetical
protein C12D12.1b protein.
Length = 648
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 107 LAGVLCSGRAASCCDLLRLSPAPGDSSE 24
+AGV C+G A+ CD + P P SS+
Sbjct: 226 VAGVTCAGADANSCDHVAYMPHPPPSSD 253
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,655,174
Number of Sequences: 27780
Number of extensions: 236693
Number of successful extensions: 643
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -