Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_D01
         (768 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        27   0.19 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   3.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   9.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    21   9.5  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 27.1 bits (57), Expect = 0.19
 Identities = 10/33 (30%), Positives = 18/33 (54%)
 Frame = +1

Query: 67  QHDAALPEHNTPARNGSRLQTIPSPEHRTELYP 165
           QH++  P  ++P  +GS   T P+    + +YP
Sbjct: 58  QHNSPSPTGSSPQHSGSSASTSPAARTTSSMYP 90


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/18 (55%), Positives = 14/18 (77%), Gaps = 2/18 (11%)
 Frame = -2

Query: 158 NSVRCSGLGI--VCRRLP 111
           N+V CSGLG+  + RR+P
Sbjct: 776 NAVDCSGLGVEEIPRRIP 793


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +3

Query: 21  VLGRITWRRAESQQIAARRCSTXAQHPGQERKSSTDYSEPRTSN*VISGPSE 176
           +LG I   R+ S    ARR +      G   K +T + E  + N + SGP E
Sbjct: 10  LLGSIA--RSLSLDRRARRGAADLSLAGNATKVNTVHEEESSLNDLFSGPEE 59


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 282 LXSRVSHSKRXTRRRSPIWIAE 217
           L + VSH++R      P WI E
Sbjct: 690 LAAEVSHTQRLVVHVPPRWIVE 711


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 92  CSGRAASCCDLLRLSPAPGDSS 27
           C  R  + C++ R +   GDSS
Sbjct: 711 CHNRNVTTCNMFRKTNLSGDSS 732


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,712
Number of Sequences: 438
Number of extensions: 3248
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24032646
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)