Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_C24
(875 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0446 - 24414351-24414427,24414491-24414881 30 2.8
09_03_0161 - 12921692-12921880,12922664-12922739,12923045-129231... 29 3.7
01_06_0424 - 29237398-29237730,29238620-29238668,29240099-29240544 29 3.7
10_08_0339 + 16922509-16923876,16923941-16924384,16924469-169246... 29 6.5
04_04_0812 - 28251775-28252119 29 6.5
10_08_0687 - 19893148-19893327,19893442-19893645,19893761-198940... 28 8.5
04_03_1028 - 21827961-21827972,21828018-21828112,21828286-218283... 28 8.5
03_02_1012 + 13207907-13207990,13209196-13209280,13209402-132101... 28 8.5
01_01_0940 + 7417035-7417124,7417989-7418051,7418632-7418736,741... 28 8.5
>03_05_0446 - 24414351-24414427,24414491-24414881
Length = 155
Score = 29.9 bits (64), Expect = 2.8
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = -3
Query: 333 RRTCWRPRGASCGSAXLGGRTTYDDPPALSEGAGGRVTDY 214
RR WRP GAS G GG DP ++G GGR D+
Sbjct: 11 RRRRWRPGGASLGLGR-GGPPLSGDP---TKGYGGRYDDH 46
>09_03_0161 -
12921692-12921880,12922664-12922739,12923045-12923157,
12923250-12923477
Length = 201
Score = 29.5 bits (63), Expect = 3.7
Identities = 16/37 (43%), Positives = 19/37 (51%)
Frame = +3
Query: 312 WAASTCDADLPPPFLGTSRVTDRPLSXKLTRQAEGRL 422
WAA+ A L PP L T + P S +L R GRL
Sbjct: 6 WAAAVAPATLNPPLL-TLSASSSPSSSRLRRSVLGRL 41
>01_06_0424 - 29237398-29237730,29238620-29238668,29240099-29240544
Length = 275
Score = 29.5 bits (63), Expect = 3.7
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Frame = -1
Query: 188 CSKISCT---HSAGRGPTHARGLGCKGTR 111
CSK + T H GRGP H L C G R
Sbjct: 113 CSKWAVTRFGHEMGRGPCHFPSLSCSGAR 141
>10_08_0339 +
16922509-16923876,16923941-16924384,16924469-16924655,
16924750-16925702
Length = 983
Score = 28.7 bits (61), Expect = 6.5
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
Frame = -2
Query: 319 AAQGGELWIGXPGGSDHVRRSPRALRGGRWTRHRLQNKRVWCT-----DAAK*AAPTPR- 158
A +GG +G GGS HV R P RG + RL T D + AAP+PR
Sbjct: 702 APEGGPRGVGVGGGSHHVPR-PSISRGTQRLYVRLNTLEYVLTHLHAIDKSLVAAPSPRF 760
Query: 157 GGVQRTREVSAAKAHDILA 101
G + + + A+ ++ A
Sbjct: 761 DGARAAAKSAIARVAEVAA 779
>04_04_0812 - 28251775-28252119
Length = 114
Score = 28.7 bits (61), Expect = 6.5
Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
Frame = -2
Query: 355 RKGGGRSASHVLAAQ--GGELWIGXPGGSDHVRRSPRALRGGRWTRHRLQNKRVWCTDAA 182
R+GGG +A L + GG IG GG D R GR+ R R W A
Sbjct: 36 RRGGGATAMAALCRRLGGGRTGIGDGGGCDGCGRGGGCDGCGRYPPMREDEPRSWVRIVA 95
Query: 181 K-*AAPTPR 158
A TPR
Sbjct: 96 PLDLAHTPR 104
>10_08_0687 -
19893148-19893327,19893442-19893645,19893761-19894096,
19894185-19894472,19894561-19894776,19896414-19896737
Length = 515
Score = 28.3 bits (60), Expect = 8.5
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 145 RTREVSAAKAHDILAPDDILNAHIQFRISD-GTV 47
R+ E+S KAHD + DIL IQ SD GTV
Sbjct: 264 RSDELSNTKAHDTDSRQDILTRFIQATTSDSGTV 297
>04_03_1028 -
21827961-21827972,21828018-21828112,21828286-21828361,
21828921-21829037,21829532-21829621,21830011-21830056,
21831407-21831502,21831599-21832008
Length = 313
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +2
Query: 56 ITDPKLNMSVEDIVRGQYVVCLCSRDLARALDPAPRSGCSLFC 184
+ DPK+ M D RG+ C S + R L +P C++ C
Sbjct: 177 VEDPKVKMVCRDFTRGR---CSRSANECRFLHHSPLEDCAIVC 216
>03_02_1012 +
13207907-13207990,13209196-13209280,13209402-13210186,
13210262-13210462,13210580-13210690,13211105-13211487,
13211594-13211702,13211786-13211866,13212088-13212156,
13212379-13212467,13212619-13212780,13212859-13212916,
13213143-13213373,13213516-13213662,13213779-13214333,
13214562-13214819,13215096-13215203,13215760-13215854,
13215946-13216102,13216466-13216666,13217542-13217670,
13218292-13218567
Length = 1457
Score = 28.3 bits (60), Expect = 8.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 264 DDPPALSEGAGGRVTDYRIKEFGAL 190
+DP A+ EGA GR+ + I E G+L
Sbjct: 279 EDPFAIPEGAAGRIRRFIISESGSL 303
>01_01_0940 +
7417035-7417124,7417989-7418051,7418632-7418736,
7419066-7419097,7419173-7419317,7419760-7419945,
7420134-7420224,7420333-7421021
Length = 466
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 415 PSACLVNFXLNGRSVTLEVPRKGGGRSASHV 323
P C NGR+ T EVP KG + AS++
Sbjct: 69 PQTCNTQNTSNGRTNTTEVPVKGQNKCASYL 99
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,795,755
Number of Sequences: 37544
Number of extensions: 412192
Number of successful extensions: 1403
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1402
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2467979640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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