Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_C24
         (875 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein.        31   1.1  
U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryo...    31   1.1  
U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryo...    31   1.1  
U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryo...    31   1.1  
Z73973-4|CAE54908.1|  367|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z73973-3|CAA98265.1|  468|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AF038615-2|AAB94145.1|  782|Caenorhabditis elegans Hypothetical ...    30   1.9  

>U25032-1|AAB18670.1| 1379|Caenorhabditis elegans par-3 protein.
          Length = 1379

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 385  NGRSVTLEVPRKGGGRSASHVLAAQGGELWIGXPGGS 275
            NG S  L +PR GGG SA+      GGE +    GG+
Sbjct: 1322 NGGSTRLFIPRHGGGLSAAAFATNFGGEAYETRGGGA 1358


>U00067-5|ABD63219.1| 1340|Caenorhabditis elegans Abnormal embryonic
            partitioningof cytoplasm protein 3, isoform c protein.
          Length = 1340

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 385  NGRSVTLEVPRKGGGRSASHVLAAQGGELWIGXPGGS 275
            NG S  L +PR GGG SA+      GGE +    GG+
Sbjct: 1283 NGGSTRLFIPRHGGGLSAAAFATNFGGEAYETRGGGA 1319


>U00067-4|AAK73874.1| 1376|Caenorhabditis elegans Abnormal embryonic
            partitioningof cytoplasm protein 3, isoform a protein.
          Length = 1376

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 385  NGRSVTLEVPRKGGGRSASHVLAAQGGELWIGXPGGS 275
            NG S  L +PR GGG SA+      GGE +    GG+
Sbjct: 1319 NGGSTRLFIPRHGGGLSAAAFATNFGGEAYETRGGGA 1355


>U00067-3|AAK73875.1| 1379|Caenorhabditis elegans Abnormal embryonic
            partitioningof cytoplasm protein 3, isoform b protein.
          Length = 1379

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -2

Query: 385  NGRSVTLEVPRKGGGRSASHVLAAQGGELWIGXPGGS 275
            NG S  L +PR GGG SA+      GGE +    GG+
Sbjct: 1322 NGGSTRLFIPRHGGGLSAAAFATNFGGEAYETRGGGA 1358


>Z73973-4|CAE54908.1|  367|Caenorhabditis elegans Hypothetical
           protein F25D1.1b protein.
          Length = 367

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +2

Query: 47  NGSITDPKLNMSVEDIVRGQYVVCLCSRDLARALDPAPRSGCSLFCCISAPNSFIL 214
           NG +TD  L +  + I +G     L   ++++  +   +SGC+  C I  P  FI+
Sbjct: 80  NGVLTDSTLKLLEKGIKKG----FLSFDEISKTSNDISKSGCTAVCAIVTPTHFII 131


>Z73973-3|CAA98265.1|  468|Caenorhabditis elegans Hypothetical
           protein F25D1.1a protein.
          Length = 468

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +2

Query: 47  NGSITDPKLNMSVEDIVRGQYVVCLCSRDLARALDPAPRSGCSLFCCISAPNSFIL 214
           NG +TD  L +  + I +G     L   ++++  +   +SGC+  C I  P  FI+
Sbjct: 181 NGVLTDSTLKLLEKGIKKG----FLSFDEISKTSNDISKSGCTAVCAIVTPTHFII 232


>AF038615-2|AAB94145.1|  782|Caenorhabditis elegans Hypothetical
           protein R02D3.4 protein.
          Length = 782

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 6/49 (12%)
 Frame = -2

Query: 421 SRPSACLVNFXLNGRSV------TLEVPRKGGGRSASHVLAAQGGELWI 293
           SRPSACL  F  +GR V      T E+      +  SH+L A  G ++I
Sbjct: 366 SRPSACLTQFVRDGRCVMLDSEKTTELGMNMHEKLVSHLLIANRGRIFI 414


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,435,987
Number of Sequences: 27780
Number of extensions: 269261
Number of successful extensions: 598
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2202903780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)