Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_C23
(827 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces ... 29 0.80
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 28 1.4
SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr... 28 1.9
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 28 1.9
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 27 3.2
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 26 5.7
SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr 3... 26 7.5
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha... 26 7.5
SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces po... 26 7.5
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc... 26 7.5
SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomy... 25 9.9
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 25 9.9
>SPAC959.05c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 29.1 bits (62), Expect = 0.80
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 411 PQTQRLQTIRENGIIDNPNGPPLYGVKWKKLVF 509
P + RLQ +R G+ PNG P Y ++K +VF
Sbjct: 556 PNSSRLQKLRAPGLC--PNGSPNYRNRYKLIVF 586
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 336 YHLEQFLRALPMEHTV*NTEGTEVPPQTQRLQTI 437
Y LEQ L+ P+EH + TE + PP+ R++T+
Sbjct: 86 YGLEQQLKTNPLEHPILITEPFDNPPE-NRVKTL 118
>SPBC30B4.03c |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 27.9 bits (59), Expect = 1.9
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 329 MLVSSRTIPQSTPHGTYGIKYRGNRSPSADPEAPND 436
+L S I P+ GIK +G SP + E PN+
Sbjct: 338 ILPQSMPIASVPPYSLQGIKRQGTHSPMVEGENPNN 373
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 27.9 bits (59), Expect = 1.9
Identities = 13/47 (27%), Positives = 19/47 (40%)
Frame = +2
Query: 440 REWDYRQSERPSSVWSQMEEAGIWEPRPRDGSSTPCXAGLVLYKAKV 580
R W + +SE PS + S + W D T C + K K+
Sbjct: 322 RSWFFNRSEIPSDITSGSPQPAKWSEPVADFPDTKCDIDKMFSKQKI 368
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 27.1 bits (57), Expect = 3.2
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 350 IPQSTPHGTYGIKY-RGNRSPSADPEAPNDPREWDYRQSERP 472
I + P G YG + R R +D + RE YR+ ERP
Sbjct: 35 IGREDPRGHYGSERPRRRRRDESDFRRHRESRERSYREDERP 76
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 26.2 bits (55), Expect = 5.7
Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 5/26 (19%)
Frame = +2
Query: 386 KYRGNRSP-----SADPEAPNDPREW 448
KYRG RS AD PN+PREW
Sbjct: 492 KYRGLRSLYTSQWDADEYDPNEPREW 517
>SPCC830.11c |||adenylate kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 175
Score = 25.8 bits (54), Expect = 7.5
Identities = 30/115 (26%), Positives = 42/115 (36%)
Frame = -1
Query: 599 CFTPGQRLLLYKAQVRXRMEYCSHLWAGAPKYQLLPFDSIQRRAVRIVDNPILSDRLEPL 420
C TPG QV E + K L F ++ VD + D LEP
Sbjct: 14 CGTPGTGKTTLAEQVAETTELENICIGDVVKENHLHFGFDEKWKTYDVDEDKVLDYLEPK 73
Query: 419 GLRRDFGSLCILYRMFHGECSEELFEMIPTSRFYHRTARHRSRVHPYYLEPLRSS 255
L+ CI+ G SEEL +++ R H R Y LE ++ +
Sbjct: 74 LLKGG----CIIDWHTCGLFSEELIDLVVVLRTDHSKLWERLESRGYSLEKIQEN 124
>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
Wis1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 605
Score = 25.8 bits (54), Expect = 7.5
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Frame = +2
Query: 209 IAGWYVAKKISGNA-LWMTAVAPGSMDELYSGGGRCDG 319
I +Y A + G+ + M + GSMD+LY+GG + +G
Sbjct: 378 IVDFYGAFFVEGSVFICMEYMDAGSMDKLYAGGIKDEG 415
>SPAC25A8.03c ||SPAC3C7.15c|DUF185 protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 467
Score = 25.8 bits (54), Expect = 7.5
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 773 EXDPFXHGXPIPK 735
E DPF HG PIP+
Sbjct: 105 EFDPFLHGIPIPQ 117
>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 465
Score = 25.8 bits (54), Expect = 7.5
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -1
Query: 752 GXPIPKXIPATFRDIGXLGVXVSSDVQFRSHLEGKAK 642
G P + +P R + + V ++D Q SH++G K
Sbjct: 402 GLPSLETVPEGLRTLDTVFVEATNDGQINSHIQGLTK 438
>SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 215
Score = 25.4 bits (53), Expect = 9.9
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = -1
Query: 302 HRSRVHPYYLEPLRSSTVRFQRSFLPRTIRLWNELPSSVFPERYDMSFFKRGLWRVLSGR 123
HRS + Y L SS+ S +R ++LPSS ER ++ F KR +L+ R
Sbjct: 143 HRSLIETYNLSSRISSSDNSSSSTGNEEVRNRSKLPSSK-KEREEL-FRKRKEEMILAAR 200
Query: 122 QRL 114
+R+
Sbjct: 201 KRM 203
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 25.4 bits (53), Expect = 9.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 238 LWKRTVDDRSGSR*YG*TLLRWRAVRW 318
+WK V+DRSG + G T W+ W
Sbjct: 558 VWKLLVNDRSGGKHEG-TFENWQLALW 583
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,653,806
Number of Sequences: 5004
Number of extensions: 83035
Number of successful extensions: 240
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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