Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_C23
         (827 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0397 - 24921892-24922947,24923486-24923734,24923807-249241...    31   1.1  
06_02_0206 + 13005863-13005966,13006918-13007080,13008534-130086...    30   2.6  
07_01_0863 + 7177443-7177471,7178300-7178399,7178628-7178899,717...    29   4.5  
04_04_0161 + 23203786-23203848,23204141-23204180,23204865-232050...    29   4.5  
03_05_0735 - 27247767-27248285,27249030-27249318,27250594-27251093     29   4.5  
10_08_0425 - 17806117-17806401,17806862-17806984,17807076-178072...    29   6.0  
05_01_0521 + 4500268-4500283,4500364-4500680,4500999-4501094,450...    29   6.0  
10_01_0144 - 1705429-1706250                                           28   7.9  

>04_04_0397 -
           24921892-24922947,24923486-24923734,24923807-24924157,
           24924244-24924331,24924466-24924563,24925141-24925362,
           24925490-24925585,24926410-24926481,24927156-24927305
          Length = 793

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = +2

Query: 317 GKNEMLVSSRTIPQSTPHGTYG-IKYRGNRSPSADPEAPNDPREWD 451
           G+ E  V  +T  Q+ PH  YG    R  R+ +  P A N+ + WD
Sbjct: 101 GRPESDVQVQTQTQAQPHNRYGETDNRDWRARTVQPPAANEEKSWD 146


>06_02_0206 +
           13005863-13005966,13006918-13007080,13008534-13008632,
           13008704-13008817,13009094-13009254,13009746-13009827,
           13009972-13010057,13011563-13011742,13011913-13012424,
           13012844-13013478
          Length = 711

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = +2

Query: 383 IKYRGNRSPSADPEAPNDPREWDYRQSERPSSVWSQMEEAGIWEPRPRDGSSTP 544
           ++ RG++SPS  PE    P   D R SE  S+V +  E+  +  P     S  P
Sbjct: 309 VQARGDKSPSIKPEGAKQP---DQRSSEAASTV-TPFEQLALPAPASSSSSKPP 358


>07_01_0863 +
           7177443-7177471,7178300-7178399,7178628-7178899,
           7179143-7179794,7179886-7180085,7180317-7180417,
           7180559-7181697
          Length = 830

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 398 NRSPSADPEAPNDPREWDYRQSERPSSVWSQMEEA 502
           NRS S DP++  +PRE D R+    + V +   +A
Sbjct: 659 NRSTSKDPQSVIEPRESDVREGSIENDVCASQSQA 693


>04_04_0161 +
           23203786-23203848,23204141-23204180,23204865-23205016,
           23205270-23205406,23206356-23206396,23206500-23207098,
           23207599-23207679,23208146-23208208,23209141-23209197
          Length = 410

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +1

Query: 334 GIISNNSSEHSPWNIRYKIQREPKSLRR 417
           G+ SN  +E +  ++R K+ R+PK++RR
Sbjct: 161 GLSSNGGAEQNGVDLREKLSRKPKNIRR 188


>03_05_0735 - 27247767-27248285,27249030-27249318,27250594-27251093
          Length = 435

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 20/53 (37%), Positives = 27/53 (50%)
 Frame = +1

Query: 571 SKSLCPGVKHRFALLRTPSILDANLALPSK*LRNWTSLETXTPSXPISRXVAG 729
           S+S CP V+HR      P+  D   A P K +R W SL   T S P+++   G
Sbjct: 204 SQSRCPTVQHR------PTPPDGG-APPKKVVRLWRSLPNPTHSSPVAQLHPG 249


>10_08_0425 - 17806117-17806401,17806862-17806984,17807076-17807222,
            17807307-17807450,17808557-17808668,17808762-17808898,
            17809016-17809156,17810921-17811004,17811275-17811742,
            17811858-17811936,17812494-17812506,17813884-17814460,
            17814502-17814774,17814899-17815045,17815354-17815413,
            17816124-17816510
          Length = 1058

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +1

Query: 136  TLHKPRLKKDMS*RSGNTEEGSSFHSRMVRGK-KDLWKRTVDD 261
            T  KPRL+KD   R+ N + G     ++ R   KDL++R V D
Sbjct: 927  TESKPRLEKDPQGRAVNPDLGKGDAEKLFRDHVKDLYERCVRD 969


>05_01_0521 +
           4500268-4500283,4500364-4500680,4500999-4501094,
           4501219-4501296,4501333-4501557,4502842-4502910,
           4502946-4503200
          Length = 351

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = -1

Query: 677 VQFRSHLEGKAKLASKMLGVLNRAKRCFTPGQRLLLYKAQVRXRMEYCSHLWAGAPKYQL 498
           V++R     ++KLA+ +LG ++       PG R+L         + + S +   +P+Y +
Sbjct: 118 VEYRVWNPFRSKLAAAVLGGVDNI--WIAPGTRVLYLGGASGTTVSHVSDIVGPSPRYAI 175

Query: 497 LPF 489
           LPF
Sbjct: 176 LPF 178


>10_01_0144 - 1705429-1706250
          Length = 273

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = +3

Query: 282 WMNSTPVAGGAMVKTRCWYHLEQFLRALP 368
           W+ +TP+A        CWY L   L  +P
Sbjct: 241 WLRTTPLALAPPSSAPCWYFLTTLLEIIP 269


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,894,644
Number of Sequences: 37544
Number of extensions: 646088
Number of successful extensions: 1750
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1749
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)