Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_C20
         (794 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0069 - 697811-697876,697956-698166,698265-698359,698448-69...    25   6.5  
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           28   7.4  

>04_01_0069 -
           697811-697876,697956-698166,698265-698359,698448-698513,
           698595-698643,698720-698770,698856-698908,699263-699331,
           699874-699928,700011-700099,700217-700302,700376-700432,
           700575-700716,701637-702032
          Length = 494

 Score = 24.6 bits (51), Expect(2) = 6.5
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +3

Query: 681 PXPPXGXPXXAPPPXAXPA 737
           P PP      APPP A PA
Sbjct: 70  PRPPPPSTTTAPPPPAAPA 88



 Score = 22.2 bits (45), Expect(2) = 6.5
 Identities = 12/37 (32%), Positives = 12/37 (32%)
 Frame = +3

Query: 588 RPAPXXPRPLXXXXXFXLXXSXFPXSXXXLAPXPPXG 698
           RPAP  P P        L  S  P         PP G
Sbjct: 10  RPAPTPPAPAPAPPQVFLRRSVLPPPPAPHHAPPPPG 46


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 16/50 (32%), Positives = 16/50 (32%)
 Frame = +3

Query: 591 PAPXXPRPLXXXXXFXLXXSXFPXSXXXLAPXPPXGXPXXAPPPXAXPAG 740
           PAP  P P              P      AP PP   P   PPP A   G
Sbjct: 331 PAPPPPAPSPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPGAAGRG 380


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,811,074
Number of Sequences: 37544
Number of extensions: 168397
Number of successful extensions: 852
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)