Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_C18
(823 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0198 + 1334563-1334994,1335872-1335919,1336096-1336351,133... 33 0.27
07_03_1042 + 23487326-23487443,23487555-23487957,23488057-234883... 33 0.36
07_01_0362 - 2667031-2667090,2667182-2667426,2667749-2669471,266... 31 1.5
12_02_0905 - 24188563-24189189,24189648-24190577 29 3.4
03_02_0687 + 10413338-10413430,10413538-10413934,10414040-104141... 29 3.4
12_02_0909 - 24217980-24218597,24219182-24219640 29 4.5
05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818 29 4.5
09_06_0318 - 22274966-22275144,22275846-22276812,22276890-22277093 29 5.9
06_01_0296 - 2156895-2157160,2157435-2157527,2157932-2158031,215... 29 5.9
08_01_0506 - 4400776-4400937,4401164-4401253,4401334-4401546,440... 28 7.8
06_01_0039 - 386576-387098,387173-387468,387744-388067,388165-38... 28 7.8
05_04_0355 - 20577189-20577275,20578001-20578129,20578252-205783... 28 7.8
01_06_0176 - 27233553-27234588,27235629-27235768 28 7.8
01_05_0703 - 24404580-24406373 28 7.8
>02_01_0198 +
1334563-1334994,1335872-1335919,1336096-1336351,
1336733-1336881,1336969-1337097,1337425-1337592,
1338416-1338610
Length = 458
Score = 33.1 bits (72), Expect = 0.27
Identities = 14/39 (35%), Positives = 25/39 (64%)
Frame = +3
Query: 93 NVNFIRNITGASSDARRAQESPNEVHDAFRRSSGSEIES 209
N+++IR+++GA D +++ PNEV + SS E+ S
Sbjct: 360 NISYIRSVSGAVVDLEESRDYPNEVLVMIKGSSSQEVLS 398
>07_03_1042 +
23487326-23487443,23487555-23487957,23488057-23488397,
23488621-23489660
Length = 633
Score = 32.7 bits (71), Expect = 0.36
Identities = 30/92 (32%), Positives = 37/92 (40%)
Frame = -2
Query: 693 RXTEXGEGAESAPHPHPHRYSNAPCAQERLGRYAFRAVPQPTAP*VLFPLLPGLDQETAG 514
R T S PHPHPH + + P GR+ VPQP P P D
Sbjct: 478 RFTTGNTPTTSHPHPHPHPHPHPP-----QGRF-MDNVPQPPPP-AKLPHRMFTDNSVQQ 530
Query: 513 IRGVLSQRREMPPGELDGPVGIHAG*NCYDNG 418
+Q+ EM PG + P G+ G YD G
Sbjct: 531 WHHRSNQQMEMEPGPM-LPGGLGLG-LTYDTG 560
>07_01_0362 -
2667031-2667090,2667182-2667426,2667749-2669471,
2669578-2669921,2670544-2670667,2671350-2671599,
2672486-2672571
Length = 943
Score = 30.7 bits (66), Expect = 1.5
Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Frame = +3
Query: 93 NVNFIRNITGASSDARRAQESPNEVHD--AFRRSSGSEIESIVRFVERTDIVTVDYLQCY 266
N++F +I D +A E P+ +H+ A R+S V E +V+Y C
Sbjct: 557 NLSFDLDIDVNKFDTYKA-EGPSALHNPSASMRASSVIAMDTVHSAEENSTESVEYHPCD 615
Query: 267 IQDVRRCSAAEPPGGL 314
+ DV + S+A GG+
Sbjct: 616 VDDVHKPSSAVRSGGM 631
>12_02_0905 - 24188563-24189189,24189648-24190577
Length = 518
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +3
Query: 168 HDAFRRSSGSEIESIV---RFVERTDIVTVDYLQCYIQDVRRCSAAEP 302
H + + +EI++ V R VE D+ + Y+QC I++ R A P
Sbjct: 334 HPETMKKARAEIDANVGTARLVEEADMANLPYIQCVIKETLRLRTAGP 381
>03_02_0687 +
10413338-10413430,10413538-10413934,10414040-10414168,
10414370-10414517,10414647-10415925
Length = 681
Score = 29.5 bits (63), Expect = 3.4
Identities = 18/63 (28%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +3
Query: 441 LHECPRDRRVRQGAFLSAGTVHLGSLLSLDRVP-GAGETELMVRLAGALHEMRIFPSVPG 617
L C + ++++ F T+H ++ +P AGET L+ R+ A +F S+ G
Sbjct: 241 LFRCLQRDKMKRQRFSRLLTMHAVAVTETSIIPVAAGETTLL-RIINAAMNTELFVSLAG 299
Query: 618 HKV 626
HK+
Sbjct: 300 HKM 302
>12_02_0909 - 24217980-24218597,24219182-24219640
Length = 358
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +3
Query: 183 RSSGSEIESIV---RFVERTDIVTVDYLQCYIQDVRRCSAAEPPGGLVPRFSSRE 338
R + EI S+V R ++ D+ + YL+C I + R P LVP +SR+
Sbjct: 182 RKATDEINSVVGMSRLLQEPDLANLPYLRCIITETLRLYPLAP--HLVPHEASRD 234
>05_01_0547 - 4774320-4776089,4776823-4777028,4777563-4777818
Length = 743
Score = 29.1 bits (62), Expect = 4.5
Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = -2
Query: 663 SAPHPHPHRYSNAPCAQE-RLGRYAFRAVPQPTA 565
S PHPHP R S + R GR A P P+A
Sbjct: 9 SPPHPHPARLSLVTSRRRPRAGRVAAACSPSPSA 42
>09_06_0318 - 22274966-22275144,22275846-22276812,22276890-22277093
Length = 449
Score = 28.7 bits (61), Expect = 5.9
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +2
Query: 536 PGSRGNRTYGAVGWGTARNAYLPKRSWAQG 625
PGS N TY + GW A + P W QG
Sbjct: 252 PGSAINGTYASQGWIAATWSAPPTNPWKQG 281
>06_01_0296 -
2156895-2157160,2157435-2157527,2157932-2158031,
2158634-2158738,2158832-2158972,2159056-2159568
Length = 405
Score = 28.7 bits (61), Expect = 5.9
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -2
Query: 684 EXGEGAESAPHPHPHRYSNAPCAQERLGRYAFRAVPQPTAP 562
+ G GA A HPHPH + + R GR R+ P P
Sbjct: 39 DAGAGAADAAHPHPHPHL-SKILPFRRGRPLARSYDSPPPP 78
>08_01_0506 - 4400776-4400937,4401164-4401253,4401334-4401546,
4401725-4401817,4402357-4402551,4402643-4402735,
4403554-4403649,4404186-4404633,4405078-4405745,
4406822-4406884,4408650-4408847,4409265-4409982,
4410447-4410580
Length = 1056
Score = 28.3 bits (60), Expect = 7.8
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -3
Query: 125 RSRNVPNEVHVGFGSFSIRHRSGAPAPLTGGIIDL 21
RSR PN H G G S R+ AP+ G D+
Sbjct: 945 RSRQFPNMTHAGPGQKSHVERAAINAPVQGSAADV 979
>06_01_0039 -
386576-387098,387173-387468,387744-388067,388165-388276,
388355-388482,388914-389048,389122-389250,389620-389787,
389897-390019,390099-390227,390543-390866,390946-392901
Length = 1448
Score = 28.3 bits (60), Expect = 7.8
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -2
Query: 465 DGPVGIHAG*NCYDNGRRTETEEGTRDLERHLVRPTVSVV 346
D P G G + + G T T G + ++ LV PT S +
Sbjct: 120 DDPFGEFMGDDAFFGGNNTHTMTGDQPIQASLVPPTTSTI 159
>05_04_0355 -
20577189-20577275,20578001-20578129,20578252-20578371,
20578505-20578741,20578983-20579258,20579375-20579508,
20580006-20581632
Length = 869
Score = 28.3 bits (60), Expect = 7.8
Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = -1
Query: 655 ASASAPLLKCTLCPGTLGKIRI--SCSAPANRTISSVSPAPGTRSRDSRDPRCTVPAERN 482
ASASA L+C LC + R S P N + S+ P+P SR SR P +
Sbjct: 55 ASASAASLRCPLCSQCVPFSRALGPSSLPKNLALISLLPSPPNPSR-SR-TAAAAPPPPH 112
Query: 481 APWRTRRSR 455
P SR
Sbjct: 113 VPLHADHSR 121
>01_06_0176 - 27233553-27234588,27235629-27235768
Length = 391
Score = 28.3 bits (60), Expect = 7.8
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +3
Query: 144 AQESPNEVHDAFRRSSGSEIESIVRFVERTDIVTVDYLQCYIQDVRRCSAAEPPGG 311
+ S ++ DA E +++ R++ I T DY+ CY D +A GG
Sbjct: 254 SSSSSSQAADAGGGGESEEAKAMCRWLPHLYINTNDYICCYYNDAAAGTATVAAGG 309
>01_05_0703 - 24404580-24406373
Length = 597
Score = 28.3 bits (60), Expect = 7.8
Identities = 20/55 (36%), Positives = 29/55 (52%)
Frame = +3
Query: 510 GSLLSLDRVPGAGETELMVRLAGALHEMRIFPSVPGHKVHLSNGADADAGHFRRL 674
G ++++ GAG+T L+ LAG+ R+ V G L NG DA FRR+
Sbjct: 62 GEVVAIVGPSGAGKTTLLSVLAGSADPARV---VAGEV--LVNGRAMDAARFRRV 111
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,977,826
Number of Sequences: 37544
Number of extensions: 553197
Number of successful extensions: 2080
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2075
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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