Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_C16
(816 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 33 0.36
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 31 1.4
07_03_0846 - 21983581-21986055 29 3.3
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581 29 3.3
03_05_0183 - 21681673-21682524 29 4.4
07_03_1086 + 23858419-23859423,23859527-23859610 29 5.8
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 29 5.8
02_04_0179 + 20682852-20684510,20684593-20684661,20684741-206848... 29 5.8
01_06_0695 - 31292622-31293317 29 5.8
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 32.7 bits (71), Expect = 0.36
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = +3
Query: 75 PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 203
PS TP ER S+D PR Y R+RD K+ S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 30.7 bits (66), Expect = 1.4
Identities = 16/45 (35%), Positives = 27/45 (60%)
Frame = -3
Query: 343 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 209
A+ A +GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 3.3
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = +3
Query: 201 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 350
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
Length = 311
Score = 29.5 bits (63), Expect = 3.3
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 430 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 332
G LV L R GG SAG+C S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236
>03_05_0183 - 21681673-21682524
Length = 283
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -1
Query: 639 SQAFIATLLFDPSMSALPIIAKQNSPS 559
SQAF A LL D + +A+P++ Q P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255
>07_03_1086 + 23858419-23859423,23859527-23859610
Length = 362
Score = 28.7 bits (61), Expect = 5.8
Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
Frame = -3
Query: 490 LLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA-----SKAEASLAES 326
LL CD N A + LVHAL AA A +A L A AS+ +
Sbjct: 129 LLNLSICDENKAIIVEAGAIRPLVHALKSAASPAARENAACALLRLSQLDGSAAASIGRA 188
Query: 325 GKDMLTVEPRESGGSK 278
G L V E+GG++
Sbjct: 189 GAIPLLVSLLETGGAR 204
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 28.7 bits (61), Expect = 5.8
Identities = 23/88 (26%), Positives = 30/88 (34%)
Frame = +3
Query: 39 PSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPN 218
P +RS+ A R +S D P HR P R R K D R P+
Sbjct: 498 PRHSRSRSPAEHQRRDVRNRLRSGRDGGGPDHRNSSPPVNRGRSRSRSKSRDPSKSRSPD 557
Query: 219 GLRRRVSRFECETRLVKSHCLEPPDSRG 302
++ S R S P S+G
Sbjct: 558 APAKKGSSKYNRRRSSSSRSSSPAGSKG 585
>02_04_0179 +
20682852-20684510,20684593-20684661,20684741-20684809,
20686779-20688206
Length = 1074
Score = 28.7 bits (61), Expect = 5.8
Identities = 27/94 (28%), Positives = 36/94 (38%), Gaps = 4/94 (4%)
Frame = +3
Query: 21 ESPGAGPSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSI 200
ESP A PS R PS RQ++++ D R + E P V K
Sbjct: 497 ESPSAPPSPTRKLSKVKTPSQQDRQQKEAKED----RQQKEPNPTGTPSKIAVSKLEGET 552
Query: 201 DLRDPNGL----RRRVSRFECETRLVKSHCLEPP 290
+ PN VSR E ET+ K + + P
Sbjct: 553 TQKKPNPTGTPSEMAVSRLEGETKQKKPNPIGMP 586
>01_06_0695 - 31292622-31293317
Length = 231
Score = 28.7 bits (61), Expect = 5.8
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = +3
Query: 27 PGAGPSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 161
P L Q D PS++ SST S P HR L P R
Sbjct: 3 PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,541,522
Number of Sequences: 37544
Number of extensions: 485614
Number of successful extensions: 1367
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1364
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2232933960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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