Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_C16
         (816 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000265-12|ABQ13076.1|  302|Caenorhabditis elegans Hypothetical...    29   4.0  
AF000265-11|AAK68199.1|  298|Caenorhabditis elegans Hypothetical...    29   4.0  
Z12017-1|CAA78047.1|  458|Caenorhabditis elegans Hypothetical pr...    28   7.0  
Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical pr...    28   9.2  

>AF000265-12|ABQ13076.1|  302|Caenorhabditis elegans Hypothetical
           protein C18E3.9b protein.
          Length = 302

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 21  ESPGAGPSLNRSQHDAALPSTTPRQERKSSTDYSEPRH 134
           +SPGA PS ++   D + PSTT R+   S  D +  +H
Sbjct: 144 QSPGASPSSDQIFIDDSQPSTTKRRWVISEPDDNSDKH 181


>AF000265-11|AAK68199.1|  298|Caenorhabditis elegans Hypothetical
           protein C18E3.9a protein.
          Length = 298

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +3

Query: 21  ESPGAGPSLNRSQHDAALPSTTPRQERKSSTDYSEPRH 134
           +SPGA PS ++   D + PSTT R+   S  D +  +H
Sbjct: 144 QSPGASPSSDQIFIDDSQPSTTKRRWVISEPDDNSDKH 181


>Z12017-1|CAA78047.1|  458|Caenorhabditis elegans Hypothetical
           protein R08D7.1 protein.
          Length = 458

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
 Frame = +3

Query: 21  ESPGAGPSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTEL---YPDLRSRDA--RVKK 185
           +S  + P  +R++HD+   ++ PR+ R  S D S PR   ++    P  R+R +  R ++
Sbjct: 127 DSDNSPPRPSRNRHDSDKDNSPPRRRRHDS-DNSPPRPSRKIREESPSARNRRSPPRTRR 185

Query: 186 KTDSIDLRDPNGLRRRVS 239
                D   P    RR S
Sbjct: 186 DRHDSDNSPPRNRSRRDS 203


>Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical
           protein T02E9.3 protein.
          Length = 763

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = -3

Query: 433 FGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRV 254
           FG L H  G       LP   +    S+  + ++++G    +   R+SGGSK+   +   
Sbjct: 212 FGQLTHRGGERERRHSLPRVIIEEVRSRRGSRMSQTGSQSGSPTRRQSGGSKERSPSQPD 271

Query: 253 SH--SKRETRRRSP 218
            H  +K + R RSP
Sbjct: 272 IHIVAKPQQRWRSP 285


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,263,829
Number of Sequences: 27780
Number of extensions: 380700
Number of successful extensions: 1064
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2008899418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)