Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_C15
         (834 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    30   0.35 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    30   0.47 
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    29   0.61 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   4.3  
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr...    26   5.7  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   7.6  

>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 30.3 bits (65), Expect = 0.35
 Identities = 16/48 (33%), Positives = 17/48 (35%)
 Frame = -3

Query: 796 GXRGGXGRXXGGPKXGXXGGGXGXXXXXXXXXXXXXXXXGGGGXXXGG 653
           G RGG G   GG + G  GG  G                GG G   GG
Sbjct: 23  GGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGAKGG 70



 Score = 25.8 bits (54), Expect = 7.6
 Identities = 14/44 (31%), Positives = 15/44 (34%)
 Frame = -1

Query: 783 GXGGXXGGQXGXXXVGXGGVXXXXXXAXGXXXXXXGXGGXXXGA 652
           G GG  GG+ G    G GG         G      G  G   GA
Sbjct: 24  GRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRGGSSGGRGGA 67


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +3

Query: 729 PXPPPXXPXFGPPXXLPXPP 788
           P PPP  P F PP   P PP
Sbjct: 9   PPPPPPPPGFEPPSQPPPPP 28


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = -1

Query: 339 RAPPPP----LRSLISNLSNTCDLTPLPEWSCEQSAW 241
           R+PPP     +RS+   L    D+TP+ +W  ++S W
Sbjct: 99  RSPPPSRERSVRSIEQELEQLRDVTPINQWKRKRSLW 135


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +3

Query: 729 PXPPPXXPXFGPPXXLPXPP 788
           P PPP     GPP   P PP
Sbjct: 764 PPPPPGVAGAGPPPPPPPPP 783


>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
           aminotransferase Eca39|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 380

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = -1

Query: 354 VQXCRRAPPPPLRSLISNLSNTCDLTPLPEW 262
           VQ      P P+ S    ++N  +L PLPEW
Sbjct: 2   VQTAALHGPKPMDSSHIKVTNVKELKPLPEW 32


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 17/55 (30%), Positives = 18/55 (32%)
 Frame = +2

Query: 620 GPSSXXXXXTXAPXXXPPXPXXXXXXPXAXXXXXSTPPXPTXXXPFWPPXXPPXP 784
           G SS       AP   PP P      P +     S PP      P  P   PP P
Sbjct: 116 GKSSASAAPPSAPA--PPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIP 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,498,402
Number of Sequences: 5004
Number of extensions: 18478
Number of successful extensions: 72
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)