Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_C14
         (771 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067946-1|AAC17686.3|  275|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>AF067946-1|AAC17686.3|  275|Caenorhabditis elegans Hypothetical
           protein W02G9.5 protein.
          Length = 275

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 4/113 (3%)
 Frame = -1

Query: 363 AEASLAESGKDMLTVEPRESGGSKQC-DFTSRV---SHSKRETRRRSPFGSRRSMLSVFF 196
           + +S + +G    T +    G S+ C DF   V   + ++ ++R + P  S +  +  + 
Sbjct: 18  SSSSPSSTGTTQQTFKKINDGFSRDCKDFKRLVRCWNRTEAQSRSKIPKISSKFTICSYN 77

Query: 195 LTRASRLRRSGYNSVRCRGSE*SVDDFHSWRGVVLGRAASCCDLLRLSPAPGD 37
           +     + R+ Y     +GS   +D  H WRG+ +       D+L L     D
Sbjct: 78  VLCQKTIARTDYLYRHLQGSAQFLDWEHRWRGLQVELPTFDADILGLQEVQAD 130


>Z93387-2|CAB07650.1|  763|Caenorhabditis elegans Hypothetical
           protein T02E9.3 protein.
          Length = 763

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = -1

Query: 447 FGHLVHALGRAAGGAKLPSAGLCLNASKAEASLAESGKDMLTVEPRESGGSKQCDFTSRV 268
           FG L H  G       LP   +    S+  + ++++G    +   R+SGGSK+   +   
Sbjct: 212 FGQLTHRGGERERRHSLPRVIIEEVRSRRGSRMSQTGSQSGSPTRRQSGGSKERSPSQPD 271

Query: 267 SH--SKRETRRRSP 232
            H  +K + R RSP
Sbjct: 272 IHIVAKPQQRWRSP 285


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,338,892
Number of Sequences: 27780
Number of extensions: 363463
Number of successful extensions: 1008
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)