Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_C13
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces po...    28   1.3  
SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr 1||...    27   4.0  
SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces pom...    26   5.2  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    26   6.9  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    26   6.9  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    25   9.2  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    25   9.2  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    25   9.2  

>SPAC3G6.06c |rad2|fen1|FEN-1 endonuclease|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 380

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 17/63 (26%), Positives = 28/63 (44%)
 Frame = +1

Query: 355 VIERTLPQDMVPILLNRPAVASMPLPQSHIRQPLIKDPMTREDPVSCATRGRAHLNNDAY 534
           V E+   +D V + +NR   AS  +PQ  +       P + + PV   ++G A    D+ 
Sbjct: 312 VKEKGFNEDRVKLGINRLEKASKTIPQGRLDSFFKPVPSSPKKPVDTKSKGSAKRKRDSN 371

Query: 535 LAG 543
             G
Sbjct: 372 KGG 374


>SPAC4F10.13c |mpd2||GYF domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 992

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 758 WCKAKLKGLTEGHHQE 711
           WCK  LKGL EG + E
Sbjct: 875 WCKISLKGLNEGVNYE 890


>SPAC8E11.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 338

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +2

Query: 368 HSHRTWSLSSSTAPQSQACPSLSRISANRLLKI 466
           +S RT  LSS T P+S+  P L   +A RL  I
Sbjct: 227 NSSRTIELSSVTLPKSEDEPYLDYSAARRLCSI 259


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -2

Query: 338 CSMESRGLRWAQFTTRTWSGTRKIFGSCASSRIHGTRR 225
           C++ +   +WA+ +T     TR++F  C  SR++   R
Sbjct: 67  CAVSNLAKQWAELSTTDKEKTRRMF--CTPSRLNTAHR 102


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 720 PPGVEPAA*LTQHGNLTRPGHRKD*QINSSFLIRW 616
           P G  PA  +T  GNL  P + +D Q+    +  W
Sbjct: 252 PDGSNPADGITVTGNLLSPPNSRDLQVEKLSVSAW 286


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 574  DKSLHQLRTGMHHHPPNQERAVNLSILPV 660
            D +LH     + +H  + E A NLSILP+
Sbjct: 1061 DDNLHHGEIYLRNHILSDEMANNLSILPI 1089


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
 Frame = +1

Query: 601 GMHHHPPNQERAVNLSILPVSGPGEIXVLSQLSRRLHSWWXPSVNPL--SLALHH 759
           GM H P  +     L+I+P S  G + + SQ    + S    SV  L  S  L H
Sbjct: 775 GMQHQPHEKHSIRTLAIVPSSSTGLLILFSQKLTSVLSVMGKSVKVLRQSSVLEH 829


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 622 SVGGGACPFLVGGAICLVNSGNERDSSLLNRRRYLGV 512
           ++  G    L  G + ++N G E D  L N  RYL V
Sbjct: 44  NIDAGTMSPLEHGEVFVLNDGGEVDLDLGNYERYLNV 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,127,846
Number of Sequences: 5004
Number of extensions: 62100
Number of successful extensions: 137
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)