Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP04_T7_C13
(777 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0796 + 6190931-6192745 31 1.3
09_04_0402 - 17304828-17305622 30 2.4
04_04_1192 + 31611804-31612113,31612235-31614058,31614098-316148... 29 3.1
04_01_0248 + 3254493-3254599,3258414-3258681,3260797-3261074,326... 29 3.1
01_06_1822 - 40132919-40133208,40134313-40134398,40135067-401355... 29 3.1
02_02_0475 - 10746593-10748104 29 4.1
12_02_0975 + 24991666-24991956,24994303-24994485 29 5.4
11_02_0134 - 8681176-8681193,8681452-8681987,8682028-8682544 29 5.4
05_04_0314 - 20133281-20133824,20133911-20134991,20135116-20135488 29 5.4
02_01_0775 + 5775949-5777385 29 5.4
06_03_0622 - 22820980-22822473 28 7.2
04_04_0830 + 28491556-28492103,28492713-28492806,28492968-28493054 28 7.2
07_01_1005 + 8509777-8509968,8510059-8510205,8510326-8510544,851... 28 9.5
>01_01_0796 + 6190931-6192745
Length = 604
Score = 30.7 bits (66), Expect = 1.3
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Frame = +1
Query: 313 LRPRDSIEHPAPDFVIERTLPQDMVPILLNRPAVASMPLPQSH--IRQPLIKDPMTRED 483
L P I AP + E L D P+L PA MP+ ++H ++ PL+++P D
Sbjct: 298 LAPLPLIREEAP-LLQEPFLFADQAPVLAPLPAPLQMPVAETHLPLQAPLLQEPFLFSD 355
>09_04_0402 - 17304828-17305622
Length = 264
Score = 29.9 bits (64), Expect = 2.4
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = -3
Query: 292 GPGQGREKFSALARVRAYMAHGAHCARITRTAWRRRMWVMLAAP 161
G G+ ++ R ++ AHG R R WRRR + +AP
Sbjct: 169 GGGEREKREQQRRRPHSFSAHGPSALREQRERWRRRRGQLSSAP 212
>04_04_1192 + 31611804-31612113,31612235-31614058,31614098-31614842,
31615047-31616835,31617136-31617163,31617343-31617794
Length = 1715
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -1
Query: 411 CGAVEEDRDHVLWECPLYDEIRGRMLDGISRSEVGPV 301
C EE DH+L CP ++ +L ISR E PV
Sbjct: 1591 CDQHEESIDHILVACPESRQLWWLLLSAISRPECLPV 1627
>04_01_0248 +
3254493-3254599,3258414-3258681,3260797-3261074,
3261708-3261711,3263037-3263118,3263196-3263220,
3263498-3263599,3264123-3264306,3264902-3265068,
3265233-3265866
Length = 616
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = -2
Query: 347 GAGCSMESRGLRWAQFTTRTWSGTRKIFGSCASS 246
G C+ + +W Q+ RTW+ R F S SS
Sbjct: 208 GNTCNSKIHNRQWVQYCERTWALNRSKFSSIGSS 241
>01_06_1822 -
40132919-40133208,40134313-40134398,40135067-40135566,
40135708-40135905
Length = 357
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/24 (62%), Positives = 17/24 (70%)
Frame = -2
Query: 374 GSVLSMTKSGAGCSMESRGLRWAQ 303
GSVL M+KSG G +M S GL AQ
Sbjct: 244 GSVLIMSKSGTGMAMFSMGLFMAQ 267
>02_02_0475 - 10746593-10748104
Length = 503
Score = 29.1 bits (62), Expect = 4.1
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -1
Query: 510 AASCRATHWILTGHGIFNKRLAD 442
AAS RATH TGHG KR+ D
Sbjct: 153 AASHRATHIAFTGHGQNRKRVPD 175
>12_02_0975 + 24991666-24991956,24994303-24994485
Length = 157
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1
Query: 354 EIRGRMLDGISRSEVGPVYHADLVRDEKNFRLLREFAHT 238
E+R D R +G A +R+E+ FRLL E+A T
Sbjct: 23 ELRFAATDDALRVPLGYAIGAPFIRNERIFRLLDEYART 61
>11_02_0134 - 8681176-8681193,8681452-8681987,8682028-8682544
Length = 356
Score = 28.7 bits (61), Expect = 5.4
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 459 NKRLADMRLREGHACDCGAVEEDRDHVLWE 370
N ++ LR+G DC ++++RD +WE
Sbjct: 309 NPKIVAALLRKGARIDCTMLDQNRDPAIWE 338
>05_04_0314 - 20133281-20133824,20133911-20134991,20135116-20135488
Length = 665
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = -1
Query: 360 YDEIRGRMLDGISRSEVGPVYHADLVRDEKNFRLLREFAHTWHTARTAR 214
YD IR I R ++ P + DLV N RLL + +HT R AR
Sbjct: 594 YDSIRD-----IVRDKLRPKWADDLVFVHNNLRLLSRRSEEYHTDREAR 637
>02_01_0775 + 5775949-5777385
Length = 478
Score = 28.7 bits (61), Expect = 5.4
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -3
Query: 289 PGQGREKFSALARVRAYMAHGAHCARITRTAWRRRMWVMLAAPE 158
PGQG + R A GAH + RRM+ LAAP+
Sbjct: 12 PGQGHINPARALAARLARATGAHVTLSVAVSAHRRMFPSLAAPD 55
>06_03_0622 - 22820980-22822473
Length = 497
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 740 KGLTE-GHHQEWSLRLN*LNTXISPGPDTGRIDR 642
+GL + GH W++R N + + GPD GRI R
Sbjct: 326 RGLVQSGHPFLWAVRSNTWSPPVDVGPDQGRIVR 359
>04_04_0830 + 28491556-28492103,28492713-28492806,28492968-28493054
Length = 242
Score = 28.3 bits (60), Expect = 7.2
Identities = 19/55 (34%), Positives = 24/55 (43%)
Frame = -2
Query: 431 GRGMLATAGRLRRIGTMSCGSVLSMTKSGAGCSMESRGLRWAQFTTRTWSGTRKI 267
GRG L A +LR G CG L + G G +RG R WS +K+
Sbjct: 24 GRGSLVAA-QLRAGGERLCGVELGSARPGGGTKGRNRG---GTGRRREWSREKKV 74
>07_01_1005 +
8509777-8509968,8510059-8510205,8510326-8510544,
8510652-8510761,8511337-8511391,8511447-8511631,
8512537-8512599,8513713-8513782,8514159-8514242,
8515925-8516159,8516213-8516517
Length = 554
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 365 GHSHRTWSLSSSTAPQSQACPSLSRISANRLLKI 466
GH+ R WSL+ + +P + A P L+ ++ ++I
Sbjct: 19 GHTDRVWSLAWNPSPGAGAGPVLASCGGDKAVRI 52
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,230,531
Number of Sequences: 37544
Number of extensions: 520068
Number of successful extensions: 1503
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1451
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1503
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -