Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_C13
         (777 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC017329-1|AAH17329.1|  481|Homo sapiens HIV-1 Rev binding prote...    31   6.1  
AF053356-14|AAC78803.1|  318|Homo sapiens nucleoporin protein.         31   6.1  
AF015042-1|AAD01550.1|  481|Homo sapiens RAB-R protein protein.        31   6.1  
BT007330-1|AAP35994.1|  479|Homo sapiens phosphatidylinositol 4-...    30   8.1  
BC003167-1|AAH03167.1|  479|Homo sapiens phosphatidylinositol 4-...    30   8.1  
AL355315-8|CAI15460.1|  479|Homo sapiens phosphatidylinositol 4-...    30   8.1  
AJ303098-1|CAC38065.1|  479|Homo sapiens type II alpha phosphati...    30   8.1  

>BC017329-1|AAH17329.1|  481|Homo sapiens HIV-1 Rev binding
           protein-like protein.
          Length = 481

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = +1

Query: 241 MRELAQEPKIFLVPDQVRVVNWAHLRPRDSIEHPAPDFVIERTLPQDMVPILLNRPAVAS 420
           ++E  ++ + ++ PDQV+   +        ++   P+    RTL  D  P L    + +S
Sbjct: 135 LQEKYEKKRWYVPPDQVKGPTYTKGSASTPVQGSIPEGKPLRTLLGDPAPSLSVAASTSS 194

Query: 421 MPLPQSHIR 447
            P+ QSH R
Sbjct: 195 QPVSQSHAR 203


>AF053356-14|AAC78803.1|  318|Homo sapiens nucleoporin protein.
          Length = 318

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = +1

Query: 241 MRELAQEPKIFLVPDQVRVVNWAHLRPRDSIEHPAPDFVIERTLPQDMVPILLNRPAVAS 420
           ++E  ++ + ++ PDQV+   +        ++   P+    RTL  D  P L    + +S
Sbjct: 61  LQEKYEKKRWYVPPDQVKGPTYTKGSASTPVQGSIPEGKPLRTLLGDPAPSLSVAASTSS 120

Query: 421 MPLPQSHIR 447
            P+ QSH R
Sbjct: 121 QPVSQSHAR 129


>AF015042-1|AAD01550.1|  481|Homo sapiens RAB-R protein protein.
          Length = 481

 Score = 30.7 bits (66), Expect = 6.1
 Identities = 18/69 (26%), Positives = 33/69 (47%)
 Frame = +1

Query: 241 MRELAQEPKIFLVPDQVRVVNWAHLRPRDSIEHPAPDFVIERTLPQDMVPILLNRPAVAS 420
           ++E  ++ + ++ PDQV+   +        ++   P+    RTL  D  P L    + +S
Sbjct: 135 LQEKYEKKRWYVPPDQVKGPTYTKGSASTPVQGSIPEGKPLRTLLGDPAPSLSVAASTSS 194

Query: 421 MPLPQSHIR 447
            P+ QSH R
Sbjct: 195 QPVSQSHAR 203


>BT007330-1|AAP35994.1|  479|Homo sapiens phosphatidylinositol
           4-kinase type II protein.
          Length = 479

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 17/41 (41%), Positives = 18/41 (43%)
 Frame = -3

Query: 349 PGQDARWNLAV*GGPSLPRGPGQGREKFSALARVRAYMAHG 227
           PG   R   A   GPS P  PG  RE+   L R R   A G
Sbjct: 32  PGGAVRVAAAAGSGPSPPGSPGHDRERQPLLDRARGAAAQG 72


>BC003167-1|AAH03167.1|  479|Homo sapiens phosphatidylinositol
           4-kinase type II protein.
          Length = 479

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 17/41 (41%), Positives = 18/41 (43%)
 Frame = -3

Query: 349 PGQDARWNLAV*GGPSLPRGPGQGREKFSALARVRAYMAHG 227
           PG   R   A   GPS P  PG  RE+   L R R   A G
Sbjct: 32  PGGAVRVAAAAGSGPSPPGSPGHDRERQPLLDRARGAAAQG 72


>AL355315-8|CAI15460.1|  479|Homo sapiens phosphatidylinositol
           4-kinase type II (PI4KII) protein.
          Length = 479

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 17/41 (41%), Positives = 18/41 (43%)
 Frame = -3

Query: 349 PGQDARWNLAV*GGPSLPRGPGQGREKFSALARVRAYMAHG 227
           PG   R   A   GPS P  PG  RE+   L R R   A G
Sbjct: 32  PGGAVRVAAAAGSGPSPPGSPGHDRERQPLLDRARGAAAQG 72


>AJ303098-1|CAC38065.1|  479|Homo sapiens type II alpha
           phosphatidylinositol 4-kinase protein.
          Length = 479

 Score = 30.3 bits (65), Expect = 8.1
 Identities = 17/41 (41%), Positives = 18/41 (43%)
 Frame = -3

Query: 349 PGQDARWNLAV*GGPSLPRGPGQGREKFSALARVRAYMAHG 227
           PG   R   A   GPS P  PG  RE+   L R R   A G
Sbjct: 32  PGGAVRVAAAAGSGPSPPGSPGHDRERQPLLDRARGAAAQG 72


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,924,369
Number of Sequences: 237096
Number of extensions: 2852037
Number of successful extensions: 9915
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9565
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9912
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9423020542
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)