Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_C13
         (777 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros...    54   2e-07
AE014298-2120|AAF48437.1|  984|Drosophila melanogaster CG5877-PA...    29   7.1  

>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
            Drosophila melanogasterDNA for type I retrotransposable
            element  R1Dm.  ).
          Length = 1021

 Score = 54.4 bits (125), Expect = 2e-07
 Identities = 32/80 (40%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
 Frame = -1

Query: 492  THWILTGHGIFNKRLADMRLREGHACDCGAVEEDRDHVLWECPLYDEIRGRMLDGISRSE 313
            T ++LTGHG FN  L    L +  AC CG   ED  H+L  CPLY ++R   LDG+    
Sbjct: 930  TSFLLTGHGSFNAFLHGRALSDTTACACGDPYEDWMHILCACPLYADLRD--LDGLGVQR 987

Query: 312  VGP--VYHADLVRDEKNFRL 259
            +G   ++   L   EK  RL
Sbjct: 988  LGENWIFEGILDDQEKTQRL 1007


>AE014298-2120|AAF48437.1|  984|Drosophila melanogaster CG5877-PA,
           isoform A protein.
          Length = 984

 Score = 29.1 bits (62), Expect = 7.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 574 DKSLHQLRTGMHHHPPNQE 630
           ++ +H L T M HHP NQ+
Sbjct: 211 EQQIHSLETAMEHHPSNQQ 229


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,974,850
Number of Sequences: 53049
Number of extensions: 810294
Number of successful extensions: 2368
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2368
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3602427675
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)