Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_C06
         (845 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...    50   5e-07
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch...    30   0.47 
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    28   1.4  
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    27   3.3  
SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces ...    26   7.7  

>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 49.6 bits (113), Expect = 5e-07
 Identities = 27/74 (36%), Positives = 37/74 (50%)
 Frame = -3

Query: 351 NLRGDYDGRGVLGFSTLTLVPNQRECIDAEILIDFEISYVNAYHRRVLDTLSPILKERDL 172
           N    + GR  LG   LTL P+ ++ ID  +L   E+ Y+N YH  V  TLSP+L     
Sbjct: 529 NTENRFAGRTYLGLKDLTLAPHCQKLIDPSLLSPEEVKYLNEYHSEVYTTLSPMLS---- 584

Query: 171 LKDLEWLEGQCIPI 130
           +   +WL     PI
Sbjct: 585 VSAKKWLSKHTSPI 598



 Score = 29.9 bits (64), Expect = 0.47
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 551 GHYLXXHEGPSRVXVASAPPTIPGLNLGQILSNEPGFYK 435
           G +L  HE P  +       + P L  G + SNEPGFY+
Sbjct: 474 GSFLNVHELPVGIGSREVFNSAP-LQAGMVTSNEPGFYE 511


>SPBC16D10.01c ||SPBC418.03c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 25/114 (21%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
 Frame = -3

Query: 459 EQRTWLLQSSGNTEFAXE------DLIEIVAVDKGSDHPKAKNLRGDYDGRGVLGFSTLT 298
           E+  WL Q + N   A +       ++E + +DKG D    K ++G Y     L  + L 
Sbjct: 79  EKYLWLAQINDNGSKALKLYQKGVTILERLLIDKGEDADLKKKIQGAYCSIAELFMTDLC 138

Query: 297 LVPNQRECIDAEILIDFEISYVNAYHRRVLDTLSPILKERDLLKDLEWLEGQCI 136
           + P+  E  +    +  +I   NA     L TL+ +   +  +++ +    +C+
Sbjct: 139 MQPDAEENCELYTKLALQIDATNA---EALQTLASMRISQQKIEEAKDALSKCL 189


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -3

Query: 300 TLVPNQRECIDAEILIDFEISYVNAYHRRVLDTLSPILKERDLLKDLEWL 151
           TL+  Q   +D  +L   E   ++    ++L  L+P   E++ LK LEWL
Sbjct: 68  TLLGEQSVQVDRVLLNRTENEKIDLECVQILRLLAPFFTEKNALKVLEWL 117


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +3

Query: 330 HRNRLSDSSP*DDR--FPYRQPQSLLDLRXRIPYSPN 434
           H+N+   +SP D    + YR P+S   +   +PY  N
Sbjct: 273 HKNQSFSASPIDPSMSYVYRAPESFSSINANVPYGRN 309


>SPAPB17E12.14c |||6-phosphofructo-2-kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -2

Query: 130 NQEVNPQEAWITRATEMQDLVSMRIG 53
           N  ++P++ W+TR  E  D V  RIG
Sbjct: 203 NFNLSPRQIWVTRHGESVDNVRGRIG 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,635,194
Number of Sequences: 5004
Number of extensions: 46440
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)