Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP04_T7_C04
         (823 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315...    33   0.36 
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581     29   3.4  
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373...    29   4.5  
03_05_0183 - 21681673-21682524                                         29   4.5  
07_03_1086 + 23858419-23859423,23859527-23859610                       29   5.9  
01_06_0695 - 31292622-31293317                                         28   7.8  

>02_04_0232 +
           21130122-21130454,21130895-21131053,21131424-21131582,
           21132420-21132512,21133321-21133437,21133623-21133697,
           21133878-21134104,21134200-21135073
          Length = 678

 Score = 32.7 bits (71), Expect = 0.36
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +2

Query: 74  PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 202
           PS TP  ER  S+D   PR     Y   R+RD    K+  S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407


>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
          Length = 311

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 429 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 331
           G LV  L R   GG    SAG+C   S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236


>06_03_1055 -
           27234824-27234838,27236087-27236125,27236322-27237388,
           27237422-27237630,27237650-27238053
          Length = 577

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 342 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRR 226
           A+ A +GK +   E  E   S+QCD T  + +S RE +R
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSREKKR 468


>03_05_0183 - 21681673-21682524
          Length = 283

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 641 SQAFIATLLFDPSMSALPIIAKQNSPS 561
           SQAF A LL D + +A+P++  Q  P+
Sbjct: 229 SQAFSAVLLADANRAAIPVVVVQKRPA 255


>07_03_1086 + 23858419-23859423,23859527-23859610
          Length = 362

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 25/76 (32%), Positives = 32/76 (42%), Gaps = 5/76 (6%)
 Frame = -2

Query: 489 LLMACRCDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA-----SKAEASLAES 325
           LL    CD N A      +   LVHAL  AA  A   +A   L         A AS+  +
Sbjct: 129 LLNLSICDENKAIIVEAGAIRPLVHALKSAASPAARENAACALLRLSQLDGSAAASIGRA 188

Query: 324 GKDMLTVEPRESGGSK 277
           G   L V   E+GG++
Sbjct: 189 GAIPLLVSLLETGGAR 204


>01_06_0695 - 31292622-31293317
          Length = 231

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = +2

Query: 26  PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 160
           P     L   Q D   PS++      SST  S P HR  L P  R
Sbjct: 3   PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,302,167
Number of Sequences: 37544
Number of extensions: 512654
Number of successful extensions: 1408
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1407
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)